Publications by authors named "Wanlu Liu"

Hyperuricemia (HUA) is a metabolic disorder characterized by abnormally elevated levels of uric acid (UA) in the blood, often accompanied by renal damage. The continuous rise in HUA incidence necessitates the development of safe, efficient natural urate-lowering pathways. This study combined network pharmacology prediction with rat model experiments to systematically evaluate the urate-lowering potential of sugarcane polyphenols (SP), a byproduct of the sugarcane sugar industry.

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The Lithium nickel manganese cobalt oxide (NCM) is a representative new energy material widely used in industry and daily life, but the systemic health influence of exposure to NCM remained largely unknown. This study aimed to reveal the impacts of NCM exposure on biological age acceleration (BAA) and metabolic alteration, as well as the mediating roles of metabolites. NCM exposure was assessed through three methods: external exposure, biomarker of exposure to NCM mixture (Li, Ni, Co, and Mn), with a particular focus on Li exposure.

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In this study, we investigated the effects of HLA-DQB1*03:01 on the onset age of type-1 narcolepsy. We pooled data from 5,339 cases from China, Europe, Korea, Japan, and the United States to conduct the first transethnic study on age of onset (OA). GWAS was used to detect the associated genes.

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Rheumatoid arthritis (RA) is an autoimmune disease attacking joints throughout the body. Cathepsins (CTSs) are essential intracellular proteases participating in immune regulation, bone remodeling, and cartilage degradation. Though the observational and experimental studies have linked the biological functions of CTSs to the pathogenesis of RA, the cause-and-effect relationship between CTSs and RA remains unclear.

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Specification of primordial germ cells (PGCs) establishes germline development during early embryogenesis, yet the underlying mechanisms in humans remain largely unknown. Here, we reveal the functional roles of germline-specific RNA-binding protein (RBP) DND1 in human PGC (hPGC) specification. We discovered that DND1 forms a complex with another RBP, NANOS3, to restrict hPGC specification.

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Introduction: Early life bone accumulation, which predicts future fragility fracture risk, is intimately associated with sex hormones. N, N-diethyl-3-methylbenzamide (DEET) is the primary and most effective active ingredient widely used globally, especially among children and adolescents. However, the effects of DEET on sex hormones and bone mass remain unclear.

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Objective: The relationship among body mass index (BMI), postoperative complications, and clinical outcomes in patients undergoing gastrectomy for gastric cancer remains unclear. This study aimed to evaluate this association using a meta-analysis.

Method: We conducted a systematic search of the PubMed, Embase, and Cochrane Library databases up to February 25, 2024.

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This study investigated the anti-inflammatory properties and sequence variations of soy peptides during simulated digestion and absorption. Results showed that 500 Da peptides with N-terminal Leu, Ile, and Tyr exhibited enhanced intestinal transport, while the absorbed peptides in the Bromelain + Flavourzyme group (SIA-BF) demonstrated the strongest anti-inflammatory activity by inhibiting IκB phosphorylation. Mass spectrometry revealed that SIA-BF peptides were rich in branched-chain amino acids at the N-terminus and basic amino acids at the C-terminus.

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Hyperuricemia, a disorder of purine metabolism associated with cardiovascular disease, gout, and kidney disease, can be alleviated by food-derived peptides. However, the precise mechanisms remain unclear, hindering their development. This study reviews uric acid-lowering peptides from various sources, focusing on two pathways: inhibiting uric acid production and promoting excretion.

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Article Synopsis
  • * A benchmark study was conducted using experimental single-cell immune profiling datasets, highlighting that the methods TRUST4 and MiXCR provided superior performance in TCR reconstruction, while DeRR also showed notable accuracy.
  • * The introduction of the YASIM-scTCR simulator allows for the generation of diverse TCR-derived sequences, but the study found that sequencing depth significantly affects the success of TCR construction from scRNA-seq data.
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  • The study explores the relationship between pulmonary toxicity from polycyclic aromatic hydrocarbons (PAHs) and the potential modifying role of vitamin D, specifically in the context of early signs of chronic obstructive pulmonary disease (COPD).
  • Using data from the NHANES 2007-2012, the researchers analyzed how PAHs negatively impact lung function and how vitamin D levels could counteract these effects among participants, particularly those with early lung dysfunction.
  • Results indicate that higher vitamin D levels are associated with better lung function and lower risk of early lung dysfunction, suggesting that vitamin D may mediate some negative impacts of PAHs through metabolic mechanisms.
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CD8 T cells exhibit remarkable phenotypic diversity in inflammation and cancer. However, a comprehensive understanding of their clonal landscape and dynamics remains elusive. Here we introduce scAtlasVAE, a deep-learning-based model for the integration of large-scale single-cell RNA sequencing data and cross-atlas comparisons.

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Background: Elevated homocysteine (Hcy) levels have been linked to cardiovascular disease (CVD), but their association with cardiometabolic multimorbidity (CMM) remains uncertain.

Methods: Data from the baseline survey of the China Northwest Cohort-Ningxia Project (CNC-NX) were used to recruit 22,566 participants. Demographic characteristics, lifestyle factors, and laboratory exam results were collected.

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The small intestine contains a two-front nutrient supply environment created by luminal dietary and microbial metabolites (enteral side) and systemic metabolites from the host (serosal side). Yet, it is unknown how each side contributes differentially to the small intestinal physiology. Here, we generated a comprehensive, high-resolution map of the small intestinal two-front nutrient supply environment.

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Fluorescent porous materials based on aggregation-induced emission (AIE) are growing into a sparkling frontier in biomedical applications. Exploring those materials represents a win-win integration and has recently progressed at a rapid pace, mainly benefiting from intrinsic advantages including tunable pore size and structure, strong guest molecule encapsulation ability, superior biocompatibility, and photophysical outcomes. With the great significance and rapid progress in this area, this review provides an integrated picture on AIE luminogen-based porous materials.

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The rapid advancement of cell therapies underscores the importance of understanding fundamental cellular attributes. Among these, cell fitness-how transplanted cells adapt to new microenvironments and maintain functional stability in vivo-is crucial. This study identifies a chemical compound, FPH2, that enhances the fitness of human chondrocytes and the repair of articular cartilage, which is typically nonregenerative.

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Article Synopsis
  • - The study investigates how inflammatory (DII) and antioxidant (CDAI) dietary patterns relate to early signs of Chronic Obstructive Pulmonary Disease (COPD) and how metabolic disorders might influence these associations, using data from over 9,500 individuals in a national health survey.
  • - Results show a higher DII correlates with worse lung function and increased metabolic issues, while a higher CDAI is linked to better lung function and fewer metabolic problems, suggesting that the dietary antioxidant intake can mitigate the negative impacts of an inflammatory diet.
  • - The analysis reveals that metabolic indicators like Triglyceride-glucose index (TyG) play a role in mediating the relationships between these dietary patterns and lung function outcomes
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Hyperuricemia (HUA), or elevated uric acid in the blood, has become more prevalent in recent years. Polyphenols, which are known to have good inhibitory activity on xanthine oxidoreductase (XOR), are effective in uric acid reduction. In this review, we address the structure-activity relationship of flavonoids that inhibit XOR activity from two perspectives: the key residues of XOR and the structural properties of flavonoids.

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The incidence of Alzheimer's disease (AD) is rising globally, yet its treatment and prediction of this condition remain challenging due to the complex pathophysiological mechanisms associated with it. Consequently, the objective of the present study was to analyze and characterize the molecular mechanisms underlying ferroptosis‑related genes (FEGs) in the pathogenesis of AD, as well as to construct a prognostic model. The findings will provide new insights for the future diagnosis and treatment of AD.

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In droplet-based single-cell and single-nucleus RNA-seq assays, systematic contamination of ambient RNA molecules biases the quantification of gene expression levels. Existing methods correct the contamination for all genes globally. However, there lacks specific evaluation of correction efficacy for varying contamination levels.

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Article Synopsis
  • Calcium homeostasis imbalance can lead to chronic diseases, making effective calcium supplements crucial for health.
  • The study focused on identifying peptide calcium chelates from soybean peptides to enhance calcium absorption while minimizing side effects.
  • Two specific peptides (GGDLVS and YEGVIL) were found to exhibit high calcium binding capacity, and the research aimed to clarify how the amino acid positions influence this binding efficiency.
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The advancement of Long-Read Sequencing (LRS) techniques has significantly increased the length of sequencing to several kilobases, thereby facilitating the identification of alternative splicing events and isoform expressions. Recently, numerous computational tools for isoform detection using long-read sequencing data have been developed. Nevertheless, there remains a deficiency in comparative studies that systemically evaluate the performance of these tools, which are implemented with different algorithms, under various simulations that encompass potential influencing factors.

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Background: Juvenile Idiopathic Arthritis (JIA) is a condition that occurs when individuals under the age of 16 develop arthritis that lasts for more than six weeks, and the cause is unknown. The development of JIA may be linked to serum metabolites. Nevertheless, the association between JIA pathogenesis and serum metabolites is unclear, and there are discrepancies in the findings across studies.

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Objectives: Frailty is an age-related syndrome associated with poor health outcomes. Studies in developed countries indicate that the dietary inflammatory index (DII) and dietary total antioxidant capacity (DTAC) are important dietary factors influencing the risk of frailty in older adults. However, few studies have explored the association between DII, DTAC, and frailty among older Chinese adults.

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