Publications by authors named "Dejun Han"

Spike morphology is crucial for wheat (Triticum aestivum L.) yield and environmental adaptation. We developed a high-throughput phenotyping platform to dissect spike morphology traits based on 54 traits in 1,359 wheat accessions.

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Position sensitive silicon photomultipliers that utilize an intrinsic continuous resistive layer (CRL SiPMs) for charge division are reviewed, and new developments of one-dimensional (1D) CRL SiPMs are reported. This study compares and analyzes the position and timing characteristics of three 1D CRL SiPM configurations: square ring (SR) electrodes with microcell sizes of 15 μm and 20 μm, and a dual parallel side strip (DPSS) electrode with a 10 μm microcell size. The position resolution degrades as microcell size increases, whereas the position measurement error remains independent of microcell size.

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Adult-plant resistance to yellow rust, caused by Puccinia striiformis f. sp. tritici, is a durable type of resistance in wheat (Triticum aestivum L.

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Biotrophic pathogens rely on host plants for carbon acquisition, making plant sugar transporters, such as Sugars Will Eventually be Exported Transporters (SWEETs), key targets in sugar competition between plants and pathogens. In this study, we identified as a f. sp.

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Bipolaris sorokiniana is a prevalent fungal pathogen that resides in the soil and affects various parts of wheat, leading to diseases such as spot blotch, common root rot, head blight and black point. The genetic mechanisms that confer resistance in wheat against this pathogen are not completely known. In this research, 1302 wheat germplasms from around the world were evaluated for resistance to spot blotch at the seedling stage, and it was found that merely 3.

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Rhizoctonia cerealis, the causal agent of sharp eyespot, is a highly destructive pathogen of wheat. Despite its global importance, the genetic and molecular mechanisms underlying virulence of R. cerealis remain poorly understood.

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The fungus Puccinia striiformis f. sp. tritici (Pst) is the causal agent of wheat stripe rust which constitutes a major limitation to wheat production.

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Arbuscular mycorrhizal (AM) symbiosis enhances nutrient acquisition and stress resilience in plants, yet the genetic mechanisms regulating this interaction in wheat remain poorly understood. This study explores the variation in AM colonization rates across a diverse set of wheat varieties and aims to identify key genes that regulate the wheat-AM symbiosis. Understanding these molecular mechanisms is crucial for improving nutrient uptake efficiency and stress resistance in wheat breeding programs.

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Microelements play important roles to maintain the normal metabolism of the human body, and deficiency of microelements always leads to a serious diseases. Manganese (Mn) is an essential microelement for the human body. However, the mechanism for regulating grain Manganese (Mn) content (GMnC) in wheat is rarely studied.

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Article Synopsis
  • A universal stress protein (USP) family exists in a variety of species, including wheat, and is important for responding to different stress conditions such as heat and toxins.
  • Researchers discovered 88 USP genes in wheat and classified them into four distinct subfamilies, showing evolutionary conservation between monocots and dicots.
  • Experiments revealed that the TaUSP85 gene plays a crucial role in enhancing stress tolerance and silencing this gene led to adverse effects like wilting and increased damage in wheat plants, indicating the significance of USPs in plant stress responses.
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The combination of a QTL on chromosome arm 4BL and Yr29 provides durable resistance with no significant yield penalty. Wheat stripe rust or yellow rust (YR), caused by Puccinia striiformis f. sp.

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Single-nucleotide polymorphisms (SNPs) are widely used as molecular markers for constructing genetic linkage maps in wheat. Compared with available SNP-based genotyping platforms, a genotyping by target sequencing (GBTS) system with capture-in-solution (liquid chip) technology has become the favored genotyping technology because it is less demanding and more cost effective, flexible, and user-friendly. In this study, a new GenoBaits WheatSNP16K (GBW16K) GBTS array was designed using datasets generated by the wheat 660K SNP array and resequencing platforms in our previous studies.

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Article Synopsis
  • Over the last century, environmental changes have shaped wheat spike morphology, which is key for adaptation and yield, but the specifics of these changes are largely unexplored.
  • This study analyzes 16 spike traits in 830 wheat varieties from 1900 to 2020, finding increases in spike weight, grain number, and kernel weight, while spike length remained unchanged.
  • Genetic analyses identified nearly 50,000 significant genetic markers linked to spike traits, revealing their genetic basis and geographical differentiation, thus providing insights for improving wheat adaptation to environmental changes.
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Article Synopsis
  • * Using a large population of 1629 plants, researchers pinpointed the YR30 locus down to a 0.52-centiMorgan interval, highlighting its potential durability as an adult plant resistance (APR) gene.
  • * Analysis of haplotypes revealed that the YR30_h6 variant exhibited greater resistance to stripe rust and resulted in a 32.94% higher grain yield under rust-affected conditions compared to other haplot
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Na exclusion from above-ground tissues via the Na-selective transporter HKT1;5 is a major salt-tolerance mechanism in crops. Using the expression genome-wide association study and yeast-one-hybrid screening, we identified TaSPL6-D, a transcriptional suppressor of TaHKT1;5-D in bread wheat. SPL6 also targeted HKT1;5 in rice and Brachypodium.

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Stay-green (SG) in wheat is a beneficial trait that increases yield and stress tolerance. However, conventional phenotyping techniques limited the understanding of its genetic basis. Spectral indices (SIs) as non-destructive tools to evaluate crop temporal senescence provide an alternative strategy.

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Article Synopsis
  • Agronomic traits significantly impact wheat yield, and identifying quantitative trait loci (QTLs) can enhance breeding efforts to improve this yield.
  • A recombinant inbred line (RIL) population was created from two wheat varieties to explore QTLs related to several traits, including grain dimensions and plant height, using a 90K SNP array across various environments.
  • The study identified multiple QTLs on different chromosomes, explaining a range of phenotypic variations for traits like thousand grain weight, grain length, grain width, and plant height, which could aid in developing improved wheat varieties.
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Fusarium head blight (FHB) is a devastating disease that occurs in warm and humid environments. The German wheat 'Centrum' has displayed moderate to high levels of FHB resistance in the field for many years. In this study, an F recombinant inbred line (RIL) population derived from cross 'Centrum' × 'Xinong 979' was evaluated for FHB response following point inoculation in five environments.

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Article Synopsis
  • Stripe rust is a significant threat to wheat crops globally, and the Chinese cultivar Lanhangxuan 121 (LHX121) shows greater resistance than its parent, L92-47, owing to space mutation breeding.
  • This research aimed to identify resistance genes in both LHX121 and L92-47 by creating segregating populations and analyzing their responses to stripe rust in multiple environments over two years.
  • QTL mapping revealed resistance loci in both cultivars, suggesting that LHX121 may harbor a novel resistance QTL on chromosome 5B, contributing to improved understanding of wheat's genetic defenses against stripe rust.
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Background: The severity and frequency of drought are expected to increase substantially in the coming century and dramatically reduce crop yields. Manipulation of rhizosphere microbiomes is an emerging strategy for mitigating drought stress in agroecosystems. However, little is known about the mechanisms underlying how drought-resistant plant recruitment of specific rhizosphere fungi enhances drought adaptation of drought-sensitive wheats.

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