Publications by authors named "Yuanhong Chen"

Objectives: To explore the effect of Pollen Pini (PP) on SMMC-7721 hepatoma cells.

Methods: The anti-proliferative effects of PP on SMMC-7721 cells were evaluated using cell counting kit-8 assay following 48 h treatment with concentrations ranging from 1.25 to 37.

View Article and Find Full Text PDF

Prototypical-part methods, e.g., ProtoPNet, enhance interpretability in image recognition by linking predictions to training prototypes, thereby offering intuitive insights into their decision-making.

View Article and Find Full Text PDF

Objectives: Epithelial ovarian cancer (EOC) is the most lethal gynecological malignancy, which has a high mortality rate due to frequent tumor recurrence. The development of drug resistance against the first-line chemotherapeutic agent, such as paclitaxel/Taxol®, represents a critical reason. The mechanisms of paclitaxel resistance remain largely unknown, and druggable drivers which can be targeted to prevent or revert paclitaxel resistance also need to be identified.

View Article and Find Full Text PDF

Constructing effective representation of lesions is essential for disease classification and localization in medical image analysis. Prototype-based models address this by leveraging visual prototypes to capture representative lesion patterns, yet effectively handling the complexity of diverse lesion characteristics remains a critical challenge, as they typically rely on single-level, fixed-size prototypes and suffer from prototype redundancy. In this paper, we present HierProtoPNet, a new prototype-based framework designed to handle the complexity of lesions in medical images.

View Article and Find Full Text PDF

Objective: The identification of epileptic lesions is crucial for improving surgical outcomes. Nevertheless, substantial focal cortical dysplasia (FCD) may be invisible on magnetic resonance imaging (MRI). We aimed to characterize the expression pattern of 18-kDa translocator protein (TSPO) in FCD and to evaluate the effectiveness of this inflammation-reflective molecular imaging technique for detecting FCD.

View Article and Find Full Text PDF

Recent advances in prototypical learning have shown remarkable potential to provide useful decision interpretations associating activation maps and predictions with class-specific training prototypes. Such prototypical learning has been well-studied for various single-label diseases, but for quite relevant and more challenging multi-label diagnosis, where multiple diseases are often concurrent within an image, existing prototypical learning models struggle to obtain meaningful activation maps and effective class prototypes due to the entanglement of the multiple diseases. In this paper, we present a novel Cross- and Intra-image Prototypical Learning (CIPL) framework, for accurate multi-label disease diagnosis and interpretation from medical images.

View Article and Find Full Text PDF

Objectives: Technological advances in identifying gene expression profiles are being applied to study an array of cancers. The goal of this study was to identify differentially expressed genes in pancreatic ductal adenocarcinoma (PDAC) and examine their potential role in tumorigenesis and metastasis.

Methods: The transcriptomic profiles of PDAC and non-tumorous tissue samples were derived from the gene expression omnibus (GEO), which is a public repository.

View Article and Find Full Text PDF
Article Synopsis
  • 2-O-α-d-glucopyranosyl-l-ascorbic acid (AA-2G) is a stable alternative to l-ascorbic acid (L-AA) used in health and skincare products, noted for its antioxidant properties.
  • Researchers focused on sucrose phosphorylases (SPase) for more efficient AA-2G synthesis, identifying BlSPase from Bifidobacterium longum as a promising enzyme operating best at pH 5.4 and 45°C.
  • They created a mutant library of BlSPase using molecular modeling and mutagenesis techniques, discovering a variant (L341V/V346P) that led to a yield of 358.6 g/L AA-2
View Article and Find Full Text PDF

Objective: This study aimed to investigate the influence of pine pollen (PP) on hepatocellular carcinoma (HCC) behavior in vitro and in vivo and explore its mechanism of action by focusing on the phosphatidylinositol 3-kinase/protein serine-threonine kinase (PI3K/AKT) signaling pathway and α-Enolase (ENO1) gene expression.

Methods: We performed a bioinformatics analysis of ENO1. HCC cells overexpressing ENO1 were developed by lentivirus transfection.

View Article and Find Full Text PDF

Oncogenic mutations in the gene are detected in >90% of pancreatic cancers (PC). In genetically engineered mouse models of PC, oncogenic drives the formation of precursor lesions and their progression to invasive PC. The Yes-associated Protein (YAP) is a transcriptional coactivator required for transformation by the RAS oncogenes and the development of PC.

View Article and Find Full Text PDF

3D medical image segmentation methods have been successful, but their dependence on large amounts of voxel-level annotated data is a disadvantage that needs to be addressed given the high cost to obtain such annotation. Semi-supervised learning (SSL) solves this issue by training models with a large unlabelled and a small labelled dataset. The most successful SSL approaches are based on consistency learning that minimises the distance between model responses obtained from perturbed views of the unlabelled data.

View Article and Find Full Text PDF

Despite recent advances in systemic therapy for hepatocellular carcinoma (HCC), the prognosis of hepatitis B virus (HBV)-induced HCC patients remains poor. By screening a sgRNA library targeting human deubiquitinases, we find that ubiquitin-specific peptidase 26 (USP26) deficiency impairs HBV-positive HCC cell proliferation. Genetically engineered murine models with Usp26 knockout confirm that Usp26 drives HCC tumorigenesis.

View Article and Find Full Text PDF
Article Synopsis
  • AI readers show comparable effectiveness to individual radiologists in detecting breast cancer from mammograms, but fall short when matched against multi-reader systems used in screening programs in countries like Australia, Sweden, and the UK.
  • A study utilizing a high-quality dataset from Victoria, Australia, simulates five AI-integrated screening pathways, finding that AI functioning as a second reader or high-confidence filter can enhance screening outcomes, improving sensitivity and specificity by a small margin.
  • While automation bias negatively impacts performance in multi-reader situations, it can benefit single-reader cases; this research suggests promising strategies for integrating AI in mammography screening and highlights the need for further studies before clinical use.
View Article and Find Full Text PDF

The objective of this study was to identify differentially expressed genes and their potential influence on the carcinogenesis of serous-type ovarian cancer tumors. Serous cancer is an epithelial ovarian cancer subtype and is the most common type of ovarian cancer. Transcriptomic profiles of serous cancer and non-cancerous datasets were obtained from the Gene Expression Omnibus (GEO-NCBI).

View Article and Find Full Text PDF

Ovarian cancer is a common malignant tumor in women, and 70 % of ovarian cancer patients are diagnosed at an advanced stage. Drug chemotherapy is an important method for treating ovarian cancer, but recurrence and chemotherapy resistance often lead to treatment failure. In this study, we screened 10 extracts of Tripterygium wilfordii, a traditional Chinese herb, and found that triptonide had potent anti-ovarian cancer activity and an IC50 of only 3.

View Article and Find Full Text PDF

Clear cell renal cell carcinoma (ccRCC) accounts for approximately 75-80% of all patients with renal cell carcinoma. Despite its prevalence, little is known regarding the key components involved in ccRCC metastasis. In this study, scRNA-seq analysis was employed to classify CD8 T cells into four sub-clusters based on their genetic profiles and immunofluorescence experiments were used to validate two key clusters.

View Article and Find Full Text PDF

Methods to detect malignant lesions from screening mammograms are usually trained with fully annotated datasets, where images are labelled with the localisation and classification of cancerous lesions. However, real-world screening mammogram datasets commonly have a subset that is fully annotated and another subset that is weakly annotated with just the global classification (i.e.

View Article and Find Full Text PDF

Among women, ovarian cancer ranks as the fifth most common cause of cancer-related deaths. This study examined the impact of Hippo signaling pathway on ovarian carcinogenesis. Therefore, the signatures related to Hippo signaling pathway were derived from the molecular signatures database (MSigDB) and were used for further analysis.

View Article and Find Full Text PDF

Although melanoma-associated antigen A3 and A6 (MAGEA3/6)-specific tumor vaccines have shown antitumor effects in melanoma and non-small cell lung cancer (NSCLC), many cancers do not respond because MAGEA3 can promote cancer without triggering an immune response. Here, we identified DUB3 as the MAGEA3 deubiquitinase. DUB3 interacts with, deubiquitinates and stabilizes MAGEA3.

View Article and Find Full Text PDF

(1) Background: pancreatic cancer is highly lethal. The role of apoptosis-stimulating protein of p53-2 (ASPP2) in this lethal disease remains unclear. This protein belongs to the ASPP family of p53 interacting proteins.

View Article and Find Full Text PDF
Article Synopsis
  • Unsupervised anomaly detection (UAD) methods utilize only normal images for training but can identify both normal and abnormal images during testing, making them crucial for medical image analysis, especially when only normal images are available.
  • The challenge arises when relying solely on normal images, which may lead to ineffective representations that struggle to detect various unseen abnormalities.
  • The paper introduces a new self-supervised pre-training method, PMSACL, which improves UAD performance by leveraging multiple pseudo classes of abnormal images to create dense clusters in the feature space, resulting in better accuracy on various medical imaging benchmarks.
View Article and Find Full Text PDF

Background: Deep brain stimulation of the anterior nucleus of the thalamus (ANT-DBS) is an effective treatment for refractory epilepsy; however, seizure outcome varies among individuals. Identifying a reliable noninvasive biomarker to predict good responders would be helpful.

Objectives: To test whether the functional connectivity between the ANT-DBS sites and the seizure foci correlates with effective seizure control in refractory epilepsy.

View Article and Find Full Text PDF

The deployment of automated deep-learning classifiers in clinical practice has the potential to streamline the diagnosis process and improve the diagnosis accuracy, but the acceptance of those classifiers relies on both their accuracy and interpretability. In general, accurate deep-learning classifiers provide little model interpretability, while interpretable models do not have competitive classification accuracy. In this paper, we introduce a new deep-learning diagnosis framework, called InterNRL, that is designed to be highly accurate and interpretable.

View Article and Find Full Text PDF

I-III-VI type QDs have unique optoelectronic properties such as low toxicity, tunable bandgaps, large Stokes shifts and a long photoluminescence lifetime, and their emission range can be continuously tuned in the visible to near-infrared light region by changing their chemical composition. Moreover, they can avoid the use of heavy metal elements such as Cd, Hg and Pb and highly toxic anions, i.e.

View Article and Find Full Text PDF