Publications by authors named "Lijun Cheng"

Pollen hydration represents the initial and critical step in pollen-stigma interactions and is necessary for successful plant fertilization. The FERONIA (FER) receptor kinase regulates pollen hydration by modulating stigmatic reactive oxygen species (ROS) accumulation through rapid alkalinization factor 23/33 (RALF23/33) and pollen coat protein B-class peptide (PCP-B) signaling. However, the function and regulatory mechanism of FER's receptor kinase activity in pollen hydration remain poorly understood.

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There is an urgent requirement to improve accessibility to diagnostic tools in remote areas. This requires assays that are easy to use, are cost-effective and produce rapid results. Important public health applications include early disease diagnosis, real-time monitoring, epidemic control and medical cost control.

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In this work, a crystalline/amorphous electrode material was prepared a simple method. Specifically, high-valent Mo was introduced to fabricate amorphous MNC-LDH, which was then used to construct crystalline NCO/amorphous MNC-LDH composite materials. The prepared sample exhibited a three-dimensional pompom-like structure composed of ultrathin nanoflakes and a hybrid interface between crystalline and amorphous phases, which benefited its electrochemical performance.

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Genome-wide association studies (GWASs) and expression analyses implicate noncoding regulatory regions as harboring risk factors for psychiatric disease, but functional characterization of these regions remains limited. Here, we perform capture STARR-sequencing of over 70,000 candidate regions to identify active enhancers in primary human neural progenitor cells (phNPCs). We select candidate regions by integrating data from NPCs, prefrontal cortex, developmental timepoints, and GWASs.

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During pollen-stigma interaction, pollen coat protein B-class peptides (PCP-Bs) compete with stigmatic rapid alkalinization factor (RALF) for interaction with FERONIA/ANJEA receptor kinases (FER/ANJ), stimulating pollen hydration and germination. However, the molecular mechanism underlying PCP-Bs-induced, FER/ANJ-regulated compatible responses remains largely unknown. Through PCP-Bγ-induced phosphoproteomic analysis, we characterized a series of pollination-related signaling pathways regulated by FER/ANJ.

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In China, antibiotic mycelial residue is categorized as hazardous waste. To achieve the harmless and resourceful disposal of cephalosporin, three types of biochars from cephalosporin mycelia residues, namely non-activated carbon (BC1), ZnCl-activated carbon (BC2), and KOH-activated carbon (BC3), were respectively fabricated by high-temperature pyrolysis carbonization technology. These three kinds of biochars were characterized via iodine value, FTIR, and SEM, and the adsorption performance of the prepared biochars was investigated using cefuroxime (CXM) as the adsorption target.

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Synthetic lethality (SL) has shown great promise for the discovery of novel targets in cancer. CRISPR double-knockout (CDKO) technologies can only screen several hundred genes and their combinations, but not genome-wide. Therefore, good SL prediction models are highly needed for genes and gene pairs selection in CDKO experiments.

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Accurately distinguishing tumor cells from normal cells is a key issue in tumor diagnosis, evaluation, and treatment. Fluorescence-based immunohistochemistry as the standard method faces the inherent challenges of the heterogeneity of tumor cells and the lack of big data analysis of probing images. Here, we have demonstrated a machine learning-driven imaging method for rapid pathological diagnosis of five types of cancers (breast, colon, liver, lung, and stomach) using a perovskite nanocrystal probe.

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Background: Lung cancer is one of the major cause of death globally. Crizotinib is a first-line drug used in treating non-small-cell lung cancer (NSCLC). However, the pathophysiological mechanisms underlying its cardiotoxicity are unknown.

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Exploring the changing process of the geographical distribution pattern of Oliv. and its main influencing factors since the last interglacial period can provide a scientific basis for the effective protection and management of the species. The MaxEnt model was used to construct the potential distribution areas of in different periods such as the last interglacial (LIG), the last glacial maximum (LGM), the mid-Holocene (MID), and the current and future (2050s and 2070s).

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Two new aromatic compounds, namely gastupdin A (), and gastupdin B (), together with three known compounds, arundin(), phomosines B () and monocillin IV (), were isolated from the aerial parts of Blume. The structures of the new compounds were confirmed through spectral analyses including NMR, HR-ESI-MS, ECD, UV, and IR. All isolated compounds were evaluated for their neuroprotective effects against 6-hydroxydopamine-induced cell death in Human Neuroblastoma Cells, with curcumin as the positive control, however, the activity of all compounds was weaker than the positive control, showing no significant activity.

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Grain filling in maize (Zea mays) is intricately linked to cell development, involving the regulation of genes responsible for the biosynthesis of storage reserves (starch, proteins, and lipids) and phytohormones. However, the regulatory network coordinating these biological functions remains unclear. In this study, we identified 1744 high-confidence target genes co-regulated by the transcription factors (TFs) ZmNAC128 and ZmNAC130 (ZmNAC128/130) through chromatin immunoprecipitation sequencing coupled with RNA-seq analysis in the zmnac128/130 loss-of-function mutants.

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Article Synopsis
  • The study found that black-necked cranes adjust their diet during winter, primarily consuming plants from families like Poaceae, Solanaceae, and Polygonaceae, with increased diversity in plant intake as winter progresses.
  • Amplicon sequencing revealed that the gut fungal community of these cranes is mostly stable, dominated by fungi from the Ascomycota and Basidiomycota groups, with specific fungal species showing enrichment at different times throughout the winter.
  • A significant correlation was identified between the cranes' dietary changes and their gut fungal communities, suggesting that diet influences gut microbiota dynamics in response to environmental pressures.
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Three previously undescribed protoilludane-type sesquiterpene aryl esters, armillanals A-C (1-3), along with seven known ones (4-10) were obtained from Armillaria gallica Marxm. & Romagn. Compounds 1 and 2 were a rare class of sesquiterpenes featuring the Δ and Δ-protoilludane skeleton.

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Article Synopsis
  • Linear π-conjugated polymers (LCPs) exhibit impressive optical features like fluorescence and electrochemiluminescence (ECL), but strong interchain interactions hinder luminescence efficiency.
  • Researchers synthesized new LCPs using 1H-1,2,4-triazole-3,5-diamine and terephthalaldehyde, which reduced π-π stacking and enhanced charge transport for brighter luminescence.
  • The modified LCPs were combined with polyethyleneimine to create an advanced ECL system for detecting colorectal cancer exosomes, demonstrating improved accuracy in sensing applications.
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The use of optoelectronic devices for high-speed and low-power data transmission and computing is considered in the next-generation logic circuits. Heterostructures, which can generate and transmit photoresponse signals dealing with different input lights, are highly desirable for optoelectronic logic gates. Here, the printed on-chip perovskite heterostructures are demonstrated to achieve optical-controlled "AND" and "OR" optoelectronic logic gates.

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Single-cell genomics is a powerful tool for studying heterogeneous tissues such as the brain. Yet little is understood about how genetic variants influence cell-level gene expression. Addressing this, we uniformly processed single-nuclei, multiomics datasets into a resource comprising >2.

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Article Synopsis
  • Psychiatric disorders are influenced by a complex combination of many genes, making their genetic risk difficult to pinpoint, even with extensive genomic studies that have identified numerous risk loci.
  • Researchers analyzed the protein levels in human brains, finding that protein expression is mainly regulated by specific gene variants and identifying significant connections between gene expression and protein production.
  • The study specifically linked certain proteins and genes to schizophrenia, highlighting the usefulness of proteomics and network analysis in uncovering the biological mechanisms behind psychiatric disorders.
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Genome-wide association studies (GWAS) and expression analyses implicate noncoding regulatory regions as harboring risk factors for psychiatric disease, but functional characterization of these regions remains limited. We performed capture STARR-sequencing of over 78,000 candidate regions to identify active enhancers in primary human neural progenitor cells (phNPCs). We selected candidate regions by integrating data from NPCs, prefrontal cortex, developmental timepoints, and GWAS.

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Article Synopsis
  • - Single-cell genomics helps us study diverse brain tissues, revealing how genetic variants affect gene expression at the cell level through an analysis of over 2.8 million nuclei from the prefrontal cortex across 388 individuals.
  • - Researchers identified more than 550,000 specific regulatory elements and over 1.4 million expression-quantitative-trait loci linked to various cell types, allowing them to develop networks that illustrate the impact of aging and neuropsychiatric disorders on cellular changes.
  • - An integrative model was created to predict single-cell gene expression and simulate cellular changes, which identified around 250 genes associated with disease risk and relevant drug targets tied to specific cell types.
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In this present study, three new wood-inhabiting fungal taxa, , and are proposed. is characterized by the ceraceous basidiomata having a smooth, cracking hymenial surface and the presence of the moniliform cystidia and ellipsoid basidiospores (7-9 × 3.5-5 µm).

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Background: Atrial fibrosis caused by long-term atrial fibrillation influences the outcomes of clinical treatment. An improved understanding of the mechanisms underlying atrial fibrillation may reveal new therapeutic targets. This study was conducted to analyze the changes in protein levels in the atrial tissue of a rat model of atrial fibrillation based on proteome sequencing.

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Osteosarcoma (OS) is the most common primary bone malignancy that exhibits remarkable histologic diversity and genetic heterogeneity. The complex nature of osteosarcoma has confounded precise molecular categorization, prognosis, and prediction for this disease. In this study, we performed a comprehensive multiplatform analysis on 86 osteosarcoma tumors, including somatic copy-number alteration, gene expression and methylation, and identified three molecularly distinct and clinically relevant subtypes of osteosarcoma.

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Emerging CRISPR-Cas9 technology permits synthetic lethality (SL) screening of large number of gene pairs from gene combination double knockout (CDKO) experiments. However, the poor integration and annotation of CDKO SL data in current SL databases limit their utility, and diverse methods of calculating SL scores prohibit their comparison. To overcome these shortcomings, we have developed SL knowledge base (SLKB) that incorporates data of 11 CDKO experiments in 22 cell lines, 16,059 SL gene pairs and 264,424 non-SL gene pairs.

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Background: The impact of genetic variants on gene expression has been intensely studied at the transcription level, yielding in valuable insights into the association between genes and the risk of complex disorders, such as schizophrenia (SCZ). However, the downstream impact of these variants and the molecular mechanisms connecting transcription variation to disease risk are not well understood.

Results: We quantitated ribosome occupancy in prefrontal cortex samples of the BrainGVEX cohort.

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