Publications by authors named "Pengda Chen"

Upon encountering antigens, B cells may undergo multiple differentiation paths, including becoming plasma cells and memory B cells. Although it is well-known that transcription factors govern gene expression programs underpinning these fate decisions in transcriptional level, the role of post-transcriptional regulators, with a focus on RNA-binding proteins, in the fate determination are lesser known. Here we find by RNA interactome capture-coupled CRISPR/Cas9 functional screening that the Csde1-Strap complex plays an important role in plasma cell differentiation.

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Eukaryotic initiation factor 4 A (eIF4A) plays critical roles during translation initiation of cellular mRNAs by forming the cap-binding eIF4F complex, recruiting the 40S small ribosome subunit, and scanning the 5' untranslated region (5' UTR) for the start codon. eIF4A1 and eIF4A2, two isoforms of eIF4A, are highly conserved and exchange freely within eIF4F complexes. The understanding of their biological and molecular functions remains incomplete if not fragmentary.

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Article Synopsis
  • Thymocyte development relies on the regulation of PI3K-Akt signaling to support cell growth and prevent diseases like leukemia and autoimmune disorders.
  • Deleting the entire miR-17∼92 microRNA family significantly hinders thymocyte growth and reduces thymus cell numbers, while individual deletions show little effect; this is similar to the impact of depleting Dicer.
  • The study indicates that miR-17∼92 promotes thymocyte proliferation by inhibiting Pten expression and suggests that targeting these microRNAs could be a strategy for treating leukemia and autoimmune conditions.
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Upon recognition of foreign antigens, naïve B cells undergo rapid activation, growth, and proliferation. How B-cell growth and proliferation are coupled with activation remains poorly understood. Combining CRISPR/Cas9-mediated functional analysis and mouse genetics approaches, we found that Dhx33, an activation-induced RNA helicase, plays a critical role in coupling B-cell activation with growth and proliferation.

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Molecular pathways controlling emigration of mature thymocytes from thymus to the periphery remain incompletely understood. Here, we show that T cell–specific ablation of glycogen synthase kinase 3 (GSK3) led to severely impaired thymic egress. In the absence of GSK3, β-catenin accumulated in the cytoplasm, where it associated with and activated Akt, leading to phosphorylation and degradation of Foxo1 and downregulation of Klf2 and S1P expression, thereby preventing emigration of thymocytes.

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Plasma cells provide high-affinity antibodies against invading pathogens. Although transcriptional and epigenetic mechanisms have been extensively studied for plasma cell differentiation, how these mechanisms respond to environmental cues remains largely unexplored. In this study, we show that ascorbic acid (vitamin C), an essential nutrient, is able to promote plasma cell differentiation and humoral immune response by enhancing TET2/3-mediated DNA demethylation.

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Article Synopsis
  • MicroRNAs (miRNAs) modulate the expression of many target genes, but it's unclear how these small changes result in specific functions.
  • An analysis of B cells from mutant mice showed that only a small fraction of target genes are suppressed by certain miRNA levels, indicating differential sensitivity among them.
  • The study reveals that miRNAs like miR-17~92 primarily regulate gene expression through translational repression, with the 5'UTR being crucial for how sensitive genes are to miRNA effects.
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  • The miR-17~92 microRNA cluster is found to be upregulated in various human cancers, including colorectal cancer (CRC), and is known to promote tumor growth and blood vessel formation.
  • Researchers observed that transgenic mice with increased levels of miR-17~92 in their intestinal epithelial cells had smaller tumors and reduced blood vessel formation in a CRC model compared to regular mice.
  • The study revealed that miR-17~92 helps prevent CRC progression by targeting specific genes that promote tumor angiogenesis, highlighting its complex role as both a potential cancer promoter and suppressor depending on the context.
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Inflammasome is an intracellular signaling complex of the innate immune system. Activation of inflammasomes promotes the secretion of interleukin 1β (IL-1β) and IL-18 and triggers pyroptosis. Caspase-1 and -11 (or -4/5 in human) in the canonical and non-canonical inflammasome pathways, respectively, are crucial for inflammasome-mediated inflammatory responses.

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Mixed lineage kinase domain-like protein (MLKL) was identified to function downstream of receptor interacting protein 3 (RIP3) in tumor necrosis factor-α (TNF)-induced necrosis (also called necroptosis). However, how MLKL functions to mediate necroptosis is unknown. By reconstitution of MLKL function in MLKL-knockout cells, we showed that the N-terminus of MLKL is required for its function in necroptosis.

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