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N-(1,3-Dimethylbutyl)-N'-phenyl-p-phenylenediamine-quinone (6PPDQ), as a recently identified environmental toxicant, has garnered significant attention because of its widespread detection in ecosystems and human habitats. Emerging evidence highlights its potential detrimental effects on various organs. However, its carcinogenic potential remains poorly understood, particularly its role in clear cell renal cell carcinoma (ccRCC). This study seeks to elucidate the molecular mechanisms underlying 6PPDQ exposure and its potential contribution to ccRCC. Potential targets of 6PPDQ (1713) were predicted using PharmMapper, SwissTargetPrediction, SEA, and CTD databases. Integration with Genecard and GEO datasets (GSE53757) identified 2074 ccRCC-related genes and 3161 differentially expressed genes, yielding 70 overlapping targets. GO and KEGG enrichment analyses revealed significant associations with PI3K-AKT, JAK-STAT, and FoxO signaling pathways. PPI network constructed via STRING and analyzed with MCODE identified five hub genes (LGALS3, IL10, MMP9, LCN2, ALB), all with AUC values >0.7 in ROC analysis, indicating diagnostic potential. Single-gene GSEA suggested hub genes modulate ccRCC progression via IL6-JAK-STAT3 and PI3K-AKT-mTOR pathways. Immune infiltration analysis showed significant dysregulation of 20 immune cell types in ccRCC, with strong correlations between hub genes and immune cell infiltration levels. Molecular docking demonstrated good binding affinities (Vina score ≤ -5.0) between 6PPDQ and hub proteins. In 769-P human ccRCC cells treated with 1-2 μM 6PPDQ for 24 h, qPCR confirmed significant upregulation of all five hub genes (*p < 0.05). Through this research, we elucidated the relationship between 6PPDQ and ccRCC in specific important genes and signaling pathways, providing a basic platform for future research on the influence of 6PPDQ on ccRCC.
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http://dx.doi.org/10.1002/jat.4920 | DOI Listing |
Int J Gen Med
September 2025
Department of Geriatrics, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, 610072, People's Republic of China.
Background: Sepsis is characterized by profound immune and metabolic perturbations, with glycolysis serving as a pivotal modulator of immune responses. However, the molecular mechanisms linking glycolytic reprogramming to immune dysfunction remain poorly defined.
Methods: Transcriptomic profiles of sepsis were obtained from the Gene Expression Omnibus.
J Inflamm Res
September 2025
Department of Orthopaedics, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei, People's Republic of China.
Introduction: While nucleus pulposus cell (NPC) degeneration is a primary driver of intervertebral disc degeneration (IVDD), the cellular heterogeneity and molecular interactions underlying NPC degeneration remain poorly characterized. Previous studies have shown that EGFR signaling plays a significant role in NPC differentiation and collagen matrix production. Consequently, this study aims to identify the critical downstream regulatory molecule of EGFR in the process of NPC degeneration.
View Article and Find Full Text PDFBiochem Biophys Rep
June 2025
Department of Public Health, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China.
Background: Synaptic dysfunction and synapse loss occur in Alzheimer's disease (AD). The current study aimed to identify synaptic-related genes with diagnostic potential for AD.
Methods: Differentially expressed genes (DEGs) were overlapped with phenotype-associated module selected through weighted gene co-expression network analysis (WGCNA), and synaptic-related genes.
Food Sci Nutr
September 2025
Department of Biology, College of Natural and Computational Sciences Mizan-Tepi University Tepi Ethiopia.
Climatic challenges increasingly threaten global food security, necessitating crops with enhanced multi-stress resilience. Through systematic transcriptomic analysis of 100 wheat genotypes under heat, drought, cold, and salt stress, we identified 3237 differentially expressed genes (DEGs) enriched in key stress-response pathways. Core transcription factors (, , ) and two functional modules governing abiotic tolerance were characterized.
View Article and Find Full Text PDFBiotechnol Appl Biochem
September 2025
Emergency Intensive Care Medicine Center, Shandong University of Traditional Chinese Medicine Affiliated Hospital, Jinan, China.
Background: Differentially expressed genes (DEGs) have been known to provide important information on disease mechanisms and potential therapeutic targets. The traditional Chinese medicine (TCM) offers a large reservoir of bioactive compounds that could modulate at these targets. This study is an attempt to investigate the biomarkers in Sepsis and COVID-19 using gene expression analysis and molecular modeling validation of TCM-derived candidate compounds targeting key DEGs associated with sepsis.
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