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Yersinia pestis is the cause of plague, historically known as the "Black Death". Marmota himalayana in the Qinghai-Tibet Plateau (QTP) natural plague focus is the primary host in China. Although several phages originating from Y. pestis have been characterized. This is the first report of isolation of P2-like phages of Y. pestis from M. himalayana. In this study, the isolation and characterization of three P2-like phages of Y. pestis were reported, which were named as vB_YpM_22, vB_YpM_46 and vB_YpM_50. Comparative genome analysis revealed that vB_YpM_22, vB_YpM_46 and vB_YpM_50 are members of the nonlambdoid P2 family, and are highly similar and collinear with enterobacteriophage P2, plague diagnostic phage L-413C and enterobacteriophage fiAA91-ss. The role of LPS core structure of Y. pestis in the phages' receptor was pinpointed. The findings of this study contribute an advance in our current knowledge of Y. pestis phages and will also play a key role in understanding the evolution of Y. pestis phages.
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http://dx.doi.org/10.1016/j.virusres.2022.198934 | DOI Listing |
Infect Genet Evol
August 2025
University of Bucharest, ArchaeoSciences Division, ICUB, Bucharest, Romania.
Six camels exhumed from a 17th-century Silk Route site in Romania, along with negative controls, were blindly investigated via dental pulp paleometagenomics and paleoproteomics for traces of Yersinia pseudotuberculosis complex including the plague agent Yersinia pestis. Specific reads were detected in sample R04 (one read) and R05 (two reads) which also yielded a 16S rRNA guanine transferase specific for Y. pestis and one other Y.
View Article and Find Full Text PDFGenes (Basel)
July 2025
USF Genomics, Global Health Infectious Disease Research Center (GHIDR), Global Health, College of Public Health, University of South Florida, Tampa, FL 33612, USA.
The Plague of Justinian marked the beginning of the First Pandemic (541-750 CE), yet no genomic evidence of has previously been recovered from the Eastern Mediterranean, where the outbreak was first recorded. This study aimed to determine whether was present in a mid-6th to early 7th century mass grave in Jerash, Jordan, and to characterize its genome within the broader context of First Pandemic strains. We analyzed samples from multiple individuals recovered from the Jerash mass grave.
View Article and Find Full Text PDFPathogens
August 2025
USF Genomics, Global Health Infectious Disease Research Center (GHIDR), Global Health, College of Public Health, University of South Florida, Tampa, FL 33612, USA.
, the causative agent of plague, has triggered multiple pandemics throughout human history, yet its long-term evolutionary patterns and reservoir dynamics remain poorly understood. Here, we present a global phylogenomic analysis of ancient and modern strains spanning from the Neolithic and Bronze Age to the present day. We show that pandemic-causing lineages did not arise from a single ancestral strain but instead emerged independently along deep branches of the phylogeny.
View Article and Find Full Text PDFActa Trop
August 2025
State Key Laboratory of Pathogen and Biosecurity, Beijing, 100071, China. Electronic address:
Rodents are carriers and hosts of numerous zoonotic pathogens, analysing the diversity of viruses and bacteria carried by rodents is important for predicting and reducing the risk of future outbreaks of zoonotic diseases. Heilongjiang is a border province in China with rich ecological resources. In this study, we characterized the zoonotic microbiota (viruses and bacteria) in wild rodents.
View Article and Find Full Text PDFIEEE Trans Comput Biol Bioinform
August 2025
Protein-protein interactions (PPIs) play an indispensable role in understanding disease-causing mechanisms, and the basic laws of food and drugs on life. Contemporary research on this issue, however, is incapable of guaranteeing structure consistency between extracted features and raw data, and fails to fully investigate the interconnection information of features. Thus, this paper proposes a subspace structure consistency-based method for protein-protein interactions prediction.
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