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The kinetic and electron density flows are studied theoretically for the gas phase pyrolysis of cubane its cage opening to reach bicyclooctatriene and then thermal rearrangement of bicyclooctatriene to produce [8]annulene which is the experimentally observed major product. The observed kinetic data at the MN15-L/maug-cc-pVTZ level of theory were in good agreement with the experimental results as compared to the CBS-QB3 method. The cage opening and the thermal rearrangement steps at the experimentally employed temperature of 520 K were exergonic and exothermic. The atmospheric rate constants calculated by means of the RRKM theory show that the cage opening is the rate-determining step. The temperature dependence of the rate constant for the cage opening step at the MN15-L level can be expressed as log(/s) = (15.63) - (48.99 kcal mol)/ ln 10. The molecular mechanism of the reactions has been investigated by means of the bonding evolution theory (BET) at the B3LYP/6-311G (d,p) level of theory. The cage opening course is described topologically by cleaving of C1-C2, C4-C8, and C5-C6 single bonds and electron saturation of the C1-C4, C2-C6, and C5-C8 bonds, while the rearrangement of bicyclooctatriene is described by C3-C7 bond rupture, depopulation of C1-C4 and C5-C8 double bonds, and electron saturation of C1-C5, C3-C4, and C7-C8 bonds. Electron density rearrangement along the two successive steps are asynchronous and the sequence of catastrophes can be represented as: -1-13-CCFFFCCFFFCC-2-6-[C]C[F][C]C-0.
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http://dx.doi.org/10.1039/d0ra05371f | DOI Listing |
J Mater Chem B
September 2025
Malopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.
Degradation during production and delivery is a significant bottleneck in developing biomolecular therapies. Protein cages, formed by engineered variants of lumazine synthase, present an effective strategy for the microbial production and isolation of labile biomolecular therapies. Genetic fusion of the target polypeptide to a cage component protomer ensures its efficient encapsulation within the cage during production in host bacterial cells, thereby protecting it from degradation.
View Article and Find Full Text PDFJ Phys Chem Lett
September 2025
School of Pharmaceutical Sciences, University of Geneva, Rue Michel-Servet 1, CH-1206 Geneva, CH, Switzerland.
Protein folding remains a formidable challenge despite significant advances, particularly in sequence-to-structure prediction. Accurately capturing thermodynamics and intermediates via simulations demands overcoming time scale limitations, making effective collective variable (CV) design for enhanced sampling crucial. Here, we introduce a strategy to automatically construct complementary, bioinspired CVs.
View Article and Find Full Text PDFJ Am Chem Soc
September 2025
Key Lab of Colloid and Interface Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, State Key Lab of Crystal Materials, Shandong University, Ji'nan 250100, People's Republic of China.
The pervasive presence of toroidal architectures across scales, from molecular assemblies to cosmic formations, reveals a universal design principle that integrates aesthetic symmetry with functional topology in nature. Yet, constructing such hierarchical toroidal organization at the nanoscale, particularly for metal nanoclusters, remains an unmet challenge. We present an unprecedented wheel-shaped silver nanocluster, [(VO⊂VO)@Ag(BuPhC≡C)(SO)(DMF)] (), encapsulating an unparalleled hierarchical toroidal [VO⊂VO] polyoxovanadate (POV).
View Article and Find Full Text PDFAnal Chem
September 2025
College of Food Science and Technology, Hebei Agricultural University, Baoding 071001, China.
Considering the ubiquitous presence and hazardous effects of fluoroquinolone antibiotics (FQs), developing efficient methods for their detection has become imperative to safeguard human health. In this work, we synthesized a porous organic cage-based novel hyper-cross-linked polymer bearing multiple amino moieties (denoted as Cage-HCP-NH) through knitting and reduction of nitro-functionalized organic cage. The Cage-HCP-NH exhibits high porosity (0.
View Article and Find Full Text PDFJ Am Chem Soc
August 2025
Key Laboratory of Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China.
Bipolarolides A and B are members of the ophiobolin family of sesterterpenes, characterized by their intricate cage-like structures. Herein we report a concise asymmetric total synthesis of bipolarolides A and B enabled by the type-II Diels-Alder reaction. The synthesis features a sequence of key transformations: an iridium-catalyzed enantioselective allylation to establish the first stereocenter, type-II Diels-Alder reaction to rapidly assemble the bicyclo[3.
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