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Pairwise similarity coefficients are downward biased when samples only record presences and sampling is partial. A simple but forgotten index proposed by Stephen Forbes in 1907 can help solve this problem. His original equation requires knowing the number of species absent in both samples that could have been present. It is proposed that this count should simply be ignored and that the coefficient should be adjusted using a simple heuristic correction. Four analyses show that the corrected equation outperforms the Dice and Simpson indices, which are highly correlated with many others. In two-sample simulations, similarity is almost always closer to the assumed value when the species pool size and sampling intensity are varied, regardless of whether the underlying abundance distribution is uniform, log-normal, or geometric. The index is also much more robust when sampling is unequal. An analysis of bat samples from peninsular Malaysia buttresses these conclusions. The corrected coefficient also indicates that local assemblages of North American mammals are random subsamples of larger species pools by returning similarity of values of around 1, and it suggests a more consistent relationship between biome-scale comparisons and local-scale comparisons. Finally, it yields a better-dispersed pattern when the biome-scale inventories are ordinated. If these results are generalizable, then the new and old equation should see wide application, potentially taking the place of the two most commonly used alternatives (the interrelated Dice and Jaccard indices) whenever sampling is incomplete.
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http://dx.doi.org/10.1890/14-0471.1 | DOI Listing |
Imaging Neurosci (Camb)
April 2025
Neuroscience and Mental Health Institute, University of Alberta, Alberta, Canada.
Functional magnetic resonance imaging (fMRI) time series data present a unique opportunity to understand the behavior of temporal brain connectivity, and models that uncover the complex dynamic workings of this organ are of keen interest in neuroscience. We are motivated to develop accurate change point detection and network estimation techniques for high-dimensional whole-brain fMRI data. To this end, we introduce(FaBiSearch), a novel change point detection method in the network structure of multivariate high-dimensional time series in order to understand the large-scale characterizations and dynamics of the brain.
View Article and Find Full Text PDFPhys Rev Lett
June 2025
Laboratoire Ondes et Matière d'Aquitaine, University of Bordeaux, CNRS, F-33400 Talence, France.
We experimentally demonstrate that the spin state (up or down) of circularly polarized light can be reliably encoded as a polar structural state (up or down) in chiral liquid crystals, with high selectivity. This enables a spin-driven, nonvolatile binary liquid crystal memory, which can be optically written and electrically erased on demand. The underlying mechanism involves an orientational buckling instability, whose direction depends on whether the handedness of light matches or opposes that of the chiral medium.
View Article and Find Full Text PDFUrol Int
June 2025
Department of Urology, Zhongshan City People's Hospital, Zhongshan, China.
Introduction: Although cystoscopy is highly accurate in managing bladder cancer, its invasive nature and high cost underscore the need for more practical, noninvasive alternatives. Urinary Twist Family BHLH Transcription Factor 1 (Twist1) methylation, an emerging biomarker, shows great promise for early diagnosis and postsurgical monitoring. Meanwhile, the Vesical Imaging-Reporting and Data System (VI-RADS), which incorporates multiple sequences of multiparametric MRI, demonstrates excellent diagnostic performance for bladder cancer.
View Article and Find Full Text PDFAngew Chem Int Ed Engl
July 2025
Institute of Functional Nano & Soft Materials (FUNSOM), Soochow University, Suzhou, Jiangsu, 215123, P.R. China.
Layer-by-layer (LBL) deposition has become a facile and promising method to fabricate highly efficient organic solar cells (OSCs). However, characterization and optimization of 3D morphology remain a grand challenge for LBL-processed active layers, and their correlation with photovoltaic properties of OSC devices is not clear to date. Here, to address this issue, the morphology and its formation mechanisms of LBL-processed active layer based on the classical D18/L8-BO blend were investigated systematically.
View Article and Find Full Text PDFNano Lett
May 2025
National Laboratory of Solid State Microstructures, Key Laboratory of Intelligent Optical Sensing and Manipulation, College of Engineering and Applied Sciences, and Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093, China.
By harnessing multiple dimensions of light to implement mathematical functions, structured optical materials introduce a twist in the paradigm of optical informatics, shifting from "displaying with light" to "computing with light". One vital subset of mathematical operators is binary operators, whose output depends on two inputs, such as Boolean logic. Herein, we propose and demonstrate an optical binary operator based on thermally controllable chiral nanostructures.
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