Publications by authors named "Yongkun Du"

Eukaryotic translation initiation factor 4A3 (eIF4A3)-mediated RNA metabolism is essential for cellular homeostasis and viral replication. However, its role in regulating antiviral innate immunity during pseudorabies virus (PRV) infection remains unknown. Here, we demonstrate that eIF4A3 protein expression was significantly downregulated both in vitro and in vivo during PRV infection.

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Background: Hyperuricemia (HUA) is a metabolic disorder caused by an imbalance between uric acid (UA) production and excretion. It is closely associated with various diseases, including gout and kidney disease. The intestines play a significant role in UA excretion, and emerging evidence suggests that gut microbiota modulate UA excretion and degradation.

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African Swine Fever (ASF) is a highly infectious, acute, hemorrhagic Swine disease caused by the African Swine Fever Virus (ASFV). It is lethal to both domestic pigs and wild boars, and has caused significant economic losses to the global pig industry. Vaccines represent the most significant means of preventing and treating viral diseases.

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African swine fever (ASF) is a virulent infectious disease caused by African swine fever virus (ASFV), which has caused a devastating blow to pig industry. There is currently no effective vaccine or drug to control the disease. A238L is a non-structural protein of African swine fever virus, which is involved in the immune escape of the virus in vivo.

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Our previous studies showed that intracellular endosomal vesicles participated in PRRS virions trafficking in the early stage of viral infection, and cholesterol retention in endosomal vesicles disturbed viral replication via blocking PRRSV-endosomal vesicles membrane fusion. However, whether endosomal vesicles were associated with PRRSV protein(s) trafficking and the role of cholesterol in this process was still unclarity. In this study, we sought to elucidate the mechanism of cholesterol in endosomal vesicles-mediated viral protein transportation.

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Scene text recognition (STR) methods have struggled to attain high accuracy and fast inference speed. Auto-Regressive (AR)-based models implement the recognition in a character-by-character manner, showing superiority in accuracy but with slow inference speed. Alternatively, Parallel Decoding (PD)-based models infer all characters in a single decoding pass, offering faster inference speed but generally worse accuracy.

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Multi-modal models have shown appealing performance in visual recognition tasks, as free-form text-guided training evokes the ability to understand fine-grained visual content. However, current models cannot be trivially applied to scene text recognition (STR) due to the compositional difference between natural and text images. We propose a novel instruction-guided scene text recognition (IGTR) paradigm that formulates STR as an instruction learning problem and understands text images by predicting character attributes, e.

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Mounting evidence suggests that a number of host nuclear-resident proteins are indispensable for the replication of picornaviruses, a typical class of cytoplasmic RNA viruses. Host nucleocytoplasmic transport is often hijacked by viruses to promote their replication in the cytoplasm of infected cells, and suppress the innate immune response. However, little is known about the mechanisms by which Senecavirus A (SVA) manipulates nucleocytoplasmic trafficking events to promote infection.

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Background: Recent evidence suggests that the gut microbiome and metabolites are intricately involved in Chronic Obstructive Pulmonary Disease (COPD) pathogenesis, yet the precise causal relationships remain unclear due to confounding factors and reverse causation. This study employs bidirectional two-sample Mendelian Randomization (MR) to clarify these connections.

Methods: Summary data from publicly available Genome-Wide Association Studies (GWAS) concerning the gut microbiome, metabolites, and COPD were compiled.

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Article Synopsis
  • PRRSV is a type of RNA virus responsible for reproductive and respiratory issues in pigs, and current vaccines are ineffective for long-lasting protection.
  • SR717, a compound known for its antitumor and antiviral effects, was tested and showed a dose-dependent ability to inhibit various PRRSV strains in lab experiments.
  • The study found that SR717 not only inhibits PRRSV infection but also stimulates antiviral response pathways, suggesting it could be a potential antiviral treatment for PRRSV.
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Unlabelled: Viruses deploy sophisticated strategies to hijack the host's translation machinery to favor viral protein synthesis and counteract innate cellular defenses. However, little is known about the mechanisms by which Senecavirus A (SVA) controls the host's translation. Using a series of sophisticated molecular cell manipulation techniques, heterogeneous nuclear ribonucleoprotein A2B1 (hnRNPA2B1) was identified as an essential host factor involved in translation control in SVA-infected cells.

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  • The study investigates how the pseudorabies virus (PRV) uses its US2 protein to undermine the host's antiviral immune response, specifically targeting the cGAS-STING signaling pathway.
  • It was found that US2 interacts with STING, leading to its degradation through a process called ubiquitination, thereby reducing STING's ability to trigger antiviral defenses.
  • The research suggests that targeting the US2 protein could be a viable strategy for developing more effective vaccines against PRV, especially in light of the limitations of existing vaccines against emerging PRV strains.
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  • The study aims to investigate the causal link between gut microbiota and migraines, addressing a research gap in understanding how these elements interact.
  • Using advanced statistical methods like bidirectional Two Sample Mendelian Randomization (TSMR), researchers analyzed existing data to establish the relationship between gut bacteria composition and migraine occurrence.
  • Results identified 14 bacterial taxa associated with migraines, with implications for potential therapeutic strategies targeting specific bacterial groups to prevent or treat migraines effectively.
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The Hippo-YAP signaling pathway plays a central role in many biological processes such as regulating cell fate, organ size, and tissue growth, and its key components are spatiotemporally expressed and posttranslationally modified during these processes. Neddylation is a posttranslational modification that involves the covalent attachment of NEDD8 to target proteins by NEDD8-specific E1-E2-E3 enzymes. Whether neddylation is involved in Hippo-YAP signaling remains poorly understood.

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Article Synopsis
  • * The study focuses on a newly created mRNA vaccine candidate (mRNA/Man-LNP), which uses modified lipid nanoparticles to enhance immune response without safety risks like insertional mutagenesis.
  • * Findings show that this mRNA vaccine triggers strong immune reactions, including IgG production and activation of T-cells, indicating its potential effectiveness in controlling African swine fever.
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Background: Many proteins of African swine fever virus (ASFV, such as p72, p54, p30, CD2v, K205R) have been successfully expressed and characterized. However, there are few reports on the DP96R protein of ASFV, which is the virulence protein of ASFV and plays an important role in the process of host infection and invasion of ASFV.

Results: Firstly, the prokaryotic expression vector of DP96R gene was constructed, the prokaryotic system was used to induce the expression of DP96R protein, and monoclonal antibody was prepared by immunizing mice.

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Article Synopsis
  • PRRSV causes severe reproductive issues in sows and pneumonia in piglets, leading to high mortality and significant economic losses.
  • Researchers found that the USP1 deubiquitinating enzyme plays a key role in PRRSV replication by stabilizing the viral protein Nsp1β, thereby enhancing the virus's ability to reproduce.
  • This study uncovers a new mechanism where PRRSV manipulates the host's immune response, suggesting USP1 as a potential target for developing treatments against the virus.
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  • Established the largest Salmonella genome database from China, detailing antimicrobial resistance (AMR) genes and their dynamics.
  • Discovered that economic, climatic, and social factors contribute to the escalation of antimicrobial resistance.
  • Released the Chinese local Salmonella genome database version 2 as an open-access resource to enhance global surveillance, inform interventions for AMR, food safety, and public health.*
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  • Pestiviruses like classical swine fever virus pose significant threats to animal health and lead to considerable economic losses in livestock globally.
  • Despite existing vaccines, their limitations include safety concerns and moderate efficacy, highlighting the need for improved vaccine development.
  • The study introduces a novel vaccine design using a herringbone-dimer strategy, demonstrating the potential of rice endosperm to express effective rE2 proteins, which showed high antigenicity and protective capabilities in pigs.
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African swine fever (ASF) is a highly infectious and lethal viral disease caused by the African swine fever virus (ASFV). The four prominent loop structures on the surface of the primary structural protein P72 are considered to be key protective epitopes. In this study, the four critical loops (ER1-4) of the ASFV p72 protein were individually fused to hepatitis B virus core particles (HBc) and self-assembled into nanoparticles to preserve the natural conformation of the loop structure and enhance its immunogenicity.

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African swine fever (ASF) has received great attention from the swine industry due to the pandemic and the lack of vaccines or effective treatments. In the present study, 13 African swine fever virus (ASFV) p54-specific nanobodies (Nbs) were successfully screened based on Bactrian camel immunization of p54 protein and phage display technology, and their reactivity with the p54 C-terminal domain (p54-CTD) was determined; however, only Nb8-horseradish peroxidase (Nb8-HRP) exhibited the best reactivity. Immunoperoxidase monolayer assay (IPMA) and immunofluorescence assay (IFA) results indicated that Nb8-HRP specifically reacted with ASFV-infected cells.

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The African swine fever virus (ASFV) is a highly infectious viral pathogen that presents a major threat to the global pig industry. No effective vaccine is available for the virus. The p54 protein, a major structural component of ASFV, is involved in virus adsorption and entry to target cells and also plays a key role in ASFV vaccine development and disease prevention.

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Porcine reproductive and respiratory syndrome (PRRS) is caused by the PRRS virus (PRRSV), which has brought huge economic losses to the pork industry worldwide since its first discovery in the late 1980s in North America. To date, there are no effective commercial vaccines or therapeutic drugs available for controlling the spread of PRRSV. Due to their unique advantages of high affinity and high specificity, nanobodies (Nbs) have received increasing attention in the process of disease diagnosis and treatment.

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