Publications by authors named "Xiaohan Song"

Introduction: Prostate adenocarcinoma (PRAD) is an extremely widespread site of urological malignancy and is the second most common male cancer in the world. Currently, research progress in immunotherapy for prostate treatment is slower compared to other tumours, which is mainly considered to be caused by the low rate of immune response in prostate cancer as a cold tumour. Recent studies have shown that intra-tumour heterogeneity (ITH) is an important impediment to PRAD immunotherapy.

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Understanding population genetic connectivity is crucial for the sustainability and persistence of marine biodiversity. As a fundamental reef-building macroalga of the coastal ecosystem, Decaisne is one of the dominant intertidal seaweeds in the Indo-Pacific region. However, its genetic structure and population connectivity have been poorly recognized.

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The emerging field of epitranscriptomics is reshaping our understanding of post-transcriptional gene regulation in inflammatory diseases. N-acetylcytidine (acC), the only known acetylation modification in RNA catalyzed by N-acetyltransferase 10 (NAT10), is known to enhance mRNA stability and translation, yet its role in inflammatory bowel disease (IBD) remains unclear. In this study, we discovered that Nat10 expression correlates with inflammatory and apoptotic pathways in human ulcerative colitis CD4 T cells.

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Dietary Cadmium (Cd) intake is essential for Cd exposure. However, the burden of cancer attributable to dietary Cd intake remains to be determined in China. To estimate the level of dietary Cd exposure, we merged the Cd concentrations in food from literature and the foods consumption from national dietary surveys.

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Activation of CD8+ T cells necessitates rapid metabolic reprogramming to fulfill the substantial biosynthetic demands of effector functions. However, the posttranscriptional mechanisms underpinning this process remain obscure. The transfer RNA (tRNA) N1-methyladenine (m1A) modification, essential for tRNA stability and protein translation, has an undefined physiological function in CD8+ T cells, particularly in antitumor responses.

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Histone lysine lactylation is a physiologically and pathologically relevant epigenetic pathway that can be stimulated by the Warburg effect-associated L-lactate. Nevertheless, the mechanism by which cells use L-lactate to generate lactyl-coenzyme A (CoA) and how this process is regulated remains unknown. Here, we report the identification of guanosine triphosphate (GTP)-specific SCS (GTPSCS) as a lactyl-CoA synthetase in the nucleus.

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Based on PM and O remote sensing concentration data in Beijing-Tianjin-Hebei and its surrounding areas from 2015 to 2020, we used trend analysis, geographic detectors, and a geographically and temporally weighted regression model to explore the spatiotemporal characteristics and key driving socio-economic factors of multi-scale PM and O concentrations. The results indicated that: ① The changing slope of PM concentration ranged from -12.93 to 0.

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Dioxin is a typical class of persistent organic pollutants (POPs) that could cause cancer. In China, the contribution of dietary dioxins to the cancer burden remains underexplored. This study evaluates the cancer risk and burden due to dietary dioxins and dioxin-like compounds among Chinese residents from 2000 to 2020.

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To analyze the channel characteristics in omnidirectional reception scenarios for non-line-of-sight ultraviolet (UV) communication, we derive expressions for the reception direction distribution based on the incident photons at the receiver and propose an omnidirectional reception path loss (PL) channel model based on the Monte Carlo (MC) method. Furthermore, we validate the proposed omnidirectional model by comparing it with the existing MC numerical model that traverses all reception directions. Results indicate that the average computation time of the proposed omnidirectional PL model is less than 0.

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Lysine benzoylation (Kbz), a new type of protein post-translational modification (PTM) we discovered, has garnered significant attention. While we initially identified SIRT2 as a debenzoylase in mammalian cells, recent findings suggest its exclusivity may be questioned. However, other debenzoylases in mammalian cells remain underexplored.

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Elevated near-surface ozone (O) concentrations have surpassed the tolerance limits of plants, significantly impacting crop growth and yield. To mitigate ozone pollution, plants must evolve a rapid and effective defense mechanism to alleviate ozone-induced damage. DNA methylation, as one of the most crucial epigenetic modifications, plays a pivotal role in maintaining gene stability, regulating gene expression, and enhancing plant resilience to environmental stressors.

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Lysine lactylation (Kla), an epigenetic mark triggered by lactate during glycolysis, including the Warburg effect, bridges metabolism and gene regulation. Enzymes such as p300 and HDAC1/3 have been pivotal in deciphering the regulatory dynamics of Kla, though questions about additional regulatory enzymes, their specific Kla substrates, and the underlying functional mechanisms persist. Here, we identify SIRT1 and SIRT3 as key "erasers" of Kla, shedding light on their selective regulation of both histone and non-histone proteins.

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The gene family holds a pivotal role as it encodes a crucial transcription factor in plants. During the process of polyploidization in broomcorn millet ( L.), there is an intriguing above-average amplification observed within the gene family.

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Article Synopsis
  • Researchers developed a new reversible modification method for proteins that can modify the N-terminal site, making it adaptable to 20 different amino acids and applicable under biologically relevant conditions.
  • This strategy allows for the switchable manipulation of proteins, including complex substrates like antibodies, enabling efficient release of native proteins through a deconjugation process.
  • The approach offers promising applications in chemical biology and medicinal research by allowing precise control over protein function and enhancing techniques like proteomics analysis.
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Proteolysis, an irreversible post-translational modification catalyzed by proteases, plays a crucial role in various biological processes. Exploring abnormally hydrolyzed proteins in pathological tissues is a valuable approach for elucidating the mechanisms underlying disease development. Herein, we have developed a cleavable 2-pyridinecarboxyaldehyde probe (2PCA-Probe) that enables efficient and in-depth N-terminomics detection, addressing limitations of previous methods.

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Point cloud registration based on local descriptors plays a crucial role in 3D computer vision applications. However, existing methods often suffer from limitations such as low accuracy, a large memory footprint, and slow speed, particularly when dealing with 3D point clouds from low-cost sensors. To overcome these challenges, we propose an efficient local descriptor called Binary Weighted Projection-point Height (BWPH) for point cloud registration.

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The Segmented Planar Imaging Detector for Electro-Optical Reconnaissance (SPIDER) is a small volume, lightweight, low energy consumption, and high-resolution system expected to replace traditional large aperture telescopes for long-distance detection. In this paper, an improved SPIDER system is proposed, which uses a multimode interference (MMI) coupler instead of an orthogonal detector, and successfully doubles the space spectrum coverage. We present a three-point configuring method to configure lenslets, calculate spatial spectrum values from the output currents obtained by MMI.

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Using transition metal compounds as sulfur hosts is regarded as a promising approach to suppress the polysulfide shuttle and accelerate redox kinetics for lithium-sulfur (Li-S) batteries. Herein, we report that a new kind of compound, electrides (exotic ionic crystalline materials in which electrons serve as anions), is efficient sulfur hosts for Li-S batteries for the first time. Based on the first-principles calculations, we found that two-dimensional (2D) electrides MC (M = Sc, Y) exhibit unprecedentedly strong binding strength toward sulfur species and surface functionalization is necessary to passivate their activity.

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Three-dimensional LiDAR systems that capture point cloud data enable the simultaneous acquisition of spatial geometry and multi-wavelength intensity information, thereby paving the way for three-dimensional point cloud recognition and processing. However, due to the irregular distribution, low resolution of point clouds, and limited spatial recognition accuracy in complex environments, inherent errors occur in classifying and segmenting the acquired target information. Conversely, two-dimensional visible light images provide real-color information, enabling the distinction of object contours and fine details, thus yielding clear, high-resolution images when desired.

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Article Synopsis
  • PM and ozone co-pollution in the Beijing-Tianjin-Hebei area is a major concern for health and economics, requiring analysis of their correlation and impact.
  • From 2015 to 2021, PM levels decreased while ozone levels fluctuated, with PM pollution highest in winter and ozone pollution peaking in summer.
  • Days with high levels of PM decreased overall, but days with excessive ozone varied; strong correlations between the two pollutants were noted in summer, while a negative correlation occurred in winter under specific meteorological conditions.
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Using first-principles calculations in combination with nonadiabatic molecular dynamics (NAMD), we propose novel heterostructures of carbon nitride (CN) and the Janus GaSnPS monolayer as promising direct Z-scheme photocatalysts for solar-driven overall water splitting. The out-of-plane electric field due to the electric polarization which is dependent on the stacking pattern alters the band alignment and catalytic activity of the heterostructures. The relatively strong interfacial nonadiabatic coupling and long quantum coherence time accelerate the interlayer carrier recombination, enabling a direct Z-scheme photocatalytic mechanism.

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Lysine benzoylation (Kbz) is a newly discovered protein post-translational modification (PTM). This PTM can be stimulated by benzoate and contributes to gene expression. However, its regulatory enzymes and substrate proteins remain largely unknown, hindering further functional studies.

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Both GLP-1 receptor (GLP-1R) and insulin receptor (IR) transmit signals for insulin release and/or cellular metabolism although using distinct sets of transducing molecules and separate pathways. We proposed a possible association of IR and GLP-1R, since they are coexpressed in diverse tissues including the pancreatic β-cells and crosstalk between their signaling was frequently reported. We showed a specific interaction between GLP-1R and IR which was independent of intracellular receptor domains and not responsive to ligand binding.

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Background: Sexual behavior is one of the main routes of HIV/AIDS spread. HIV disclosure to sexual partners has been confirmed to be an important strategy for HIV/AIDS prevention and control. We conducted a systematic review and meta-analysis to pool proportions and characteristics of HIV disclosure to sexual partners among people diagnosed with HIV in China.

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Black phosphorus (BP) has received increasing interest as a promising photocatalyst for water splitting. Nevertheless, exploring the underlying hydrogen evolution reaction (HER) mechanism and improving the water oxidizing ability remains an urgent task. Here, using first-principles calculations, we uncover the role of point defects in improving the HER activity of BP photocatalysts.

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