Publications by authors named "Ji-Ying Song"

Background: The separation of structural isomers is always a challenging task for liquid chromatography because of their similar physicochemical property. Research has found that materials with regular microporous structures exhibit excellent isomer separation performance. However, as the most easily available chromatographic material, silica stationary phases with regular and small mesopore structure have not yet been prepared, and it remains to be confirmed whether narrow pores in silica materials have the enhancing effect on shape selectivity in the separation of structural isomers.

View Article and Find Full Text PDF

Zinc finger proteins (ZNFs) are the largest family of transcription factors, yet how they activate gene expression remains unclear. In this study, we identified Zincore, a protein complex consisting of QRICH1 and SEPHS1, as a ZNF-specific coregulator essential for embryonic development in mice and associated with developmental syndromes in humans. We also identified ZFP91 as a representative Zincore client, binding the conserved promoter motif CTTTAAR.

View Article and Find Full Text PDF

Loss-of-function mutations in genome maintenance genes fuel tumorigenesis through increased genomic instability. A subset of these tumor suppressors are challenging to identify due to context dependency, including functional interactions with other genes and pathways. Here, we searched for potential causal genes that impact tumor development and/or progression in breast cancer through functional-genetic screening of candidate genes.

View Article and Find Full Text PDF

Unlabelled: Breast cancer is a heterogeneous disease with diverse morphologic and molecular subtypes. Preclinical models that recapitulate the heterogeneity of human breast cancer are needed to advance our fundamental understanding of what makes breast cancer an aggressive disease. To study mechanisms underlying breast cancer progression, we generated orthotopic cell line-derived xenograft (CDX) models from 20 different human breast cancer cell lines using both mammary intraductal injections and fat pad transplantations.

View Article and Find Full Text PDF

Mutations in genome maintenance factors drive sporadic and hereditary breast cancers. Here, we searched for potential drivers based on germline DNA analysis from a cohort consisting of patients with early-onset breast cancer negative for BRCA1/BRCA2 mutations. This revealed candidate genes that subsequently were subjected to RNA interference-based (RNAi-based) phenotype screens to reveal genome integrity effects.

View Article and Find Full Text PDF

The development of acute graft-versus-host disease (GvHD) after allogeneic hematopoietic stem cell transplantation (allo-HSCT) is facilitated by damage-associated molecular patterns (DAMPs) released upon tissue damage due to the conditioning regimen. Heme oxygenase-1 (HO-1) is a stress-inducible enzyme responsible for the breakdown of the DAMP cell-free heme. HO-1 plays a protective role in diseases characterized by systemic inflammation such as sepsis, but its role in the development of acute GvHD remains unclear.

View Article and Find Full Text PDF

Differentiation of antigen-activated B cells into proproliferative germinal center (GC) B cells depends on the activity of the transcription factors myelocytoma (MYC) and B-cell lymphoma 6 (BCL6), and the epigenetic writers disruptor of telomeric silencing 1-like (DOT1L) and enhancer of zeste homolog 2 (EZH2). GCB-like diffuse large B-cell lymphomas (GCB-DLBCLs) arise from GCB cells and closely resemble their cell of origin. Given the dependency of GCB cells on DOT1L and EZH2, we investigated the role of these epigenetic regulators in GCB-DLBCLs and observed that GCB-DLBCLs synergistically depend on the combined activity of DOT1L and EZH2.

View Article and Find Full Text PDF
Article Synopsis
  • Chirality is a critical aspect in various fields, including life sciences and pharmaceuticals, and chiral carbon dots (CCDs) show promise for chiral sensing, although suitable CCDs for tryptophan (Trp) enantiomers are limited.
  • Researchers synthesized novel CCDs using l-lysine and l-cysteine, achieving unique chiral recognition that allows them to distinguish between L-Trp and D-Trp both by fluorescence intensity and emission wavelength, with a notable enantioselectivity ratio of 4.5 at 1 mM concentration.
  • This study highlights a new chiral sensing platform with the potential for quantitative analysis and determining enantiomeric excess, paving the way for future advancements in
View Article and Find Full Text PDF

Although chemotherapy is integrated in the treatment of second-trimester pregnant cancer patients, its potential cyto- and genotoxicity to fetal tissue remains unknown. To investigate any causal relation between in utero chemotherapy exposure and fetal toxicity, late-gestation pregnant BL6 mice were exposed to vehicle, or one of six chemotherapeutic compounds, used to treat pregnant cases: cyclophosphamide, carboplatin, cisplatin (alkylating agents), epirubicin, doxorubicin (anthracyclines) or paclitaxel (taxane). fetuses were euthanized at gestational day 18.

View Article and Find Full Text PDF

The scaffold protein PEAK1 acts downstream of integrin adhesion complexes and the epidermal growth factor receptor, orchestrating signaling events that control cell proliferation and cytoskeletal remodeling. In this study we investigated the role of PEAK1 in colorectal carcinoma (CRC) progression using various in vitro and in vivo models to replicate the stepwise pathogenesis of CRC. While we observed a cell-type specific role for PEAK1 in the proliferation and in human CRC cell lines in vitro, our in vivo experiments using different CRC mouse models driven by loss of Apc, with or without oncogenic Kras or Pten loss suggest that PEAK1 does not significantly contribute to tumor formation in vivo.

View Article and Find Full Text PDF
Article Synopsis
  • - Carboxylesterase 2 (CES2) is primarily found in the liver and intestine, playing a significant role in metabolizing various compounds, influencing drug effectiveness, and affecting lipid and glucose metabolism.
  • - The study involved creating knockout mice lacking CES2 genes and transgenic mice with human CES2 to assess the effects of CES2 on drug metabolism and metabolic health.
  • - Findings revealed that while the absence of CES2 led to fatty liver and metabolic issues, introducing human CES2, especially in the intestine, improved these conditions and could potentially address metabolic syndrome challenges.
View Article and Find Full Text PDF

Fanconi anemia (FA) is a rare hereditary disease resulting from an inactivating mutation in the FA/BRCA pathway, critical for the effective repair of DNA interstrand crosslinks (ICLs). The disease is characterized by congenital abnormalities, progressing bone marrow failure, and an increased risk of developing malignancies early in life, in particular head and neck squamous cell carcinoma (HNSCC). While ICL-inducing cisplatin combined with radiotherapy is a mainstay of HNSCC treatment, cisplatin is contra-indicated for FA-HNSCC patients.

View Article and Find Full Text PDF

The efficacy of anthracycline-based chemotherapeutics, which include doxorubicin and its structural relatives daunorubicin and idarubicin, remains almost unmatched in oncology, despite a side effect profile including cumulative dose-dependent cardiotoxicity, therapy-related malignancies and infertility. Detoxifying anthracyclines while preserving their anti-neoplastic effects is arguably a major unmet need in modern oncology, as cardiovascular complications that limit anti-cancer treatment are a leading cause of morbidity and mortality among the 17 million cancer survivors in the U.S.

View Article and Find Full Text PDF
Article Synopsis
  • Transmembrane drug transporters significantly influence how drugs are processed in the body, affecting their effectiveness and safety.
  • Researchers created a new mouse model (Bab12) lacking certain drug transporters to study their impacts on drug levels and interactions.
  • Findings indicated varying effects of transporter deficiencies on different drugs, highlighting the importance of transporter interplay in drug development and the potential for using the Bab12 model to enhance pharmacological studies.
View Article and Find Full Text PDF

Unlabelled: Malignant mesothelioma is a highly aggressive tumor with a survival of only 4-18 months after diagnosis. Treatment options for this disease are limited. Immune checkpoint blockade using ipilimumab and nivolumab has recently been approved as a frontline therapy, but this led to only a small improvement in overall patient survival.

View Article and Find Full Text PDF

Although initially successful, treatments with chemotherapy often fail because of the recurrence of chemoresistant metastases. Since these tumors develop after treatment, resistance is generally thought to occur in response to chemotherapy. However, alternative mechanisms of intrinsic chemoresistance in the chemotherapy-naïve setting may exist but remain poorly understood.

View Article and Find Full Text PDF
Article Synopsis
  • * In humans, TAGs are primarily synthesized by diacylglycerol O-acyltransferases (DGAT1 and DGAT2), but researchers have discovered an alternative TAG-synthesizing system involving a protein called DIESL and its regulator TMX1.
  • * DIESL functions as an independent TAG synthase and is essential for energy balance, particularly during nutrient shortages, with its deficiency shown to negatively impact growth and energy management in mice.
View Article and Find Full Text PDF

Fanconi anemia (FA) develops due to a mutation in one of the FANC genes that are involved in the repair of interstrand crosslinks (ICLs). FANCG, a member of the FA core complex, is essential for ICL repair. Previous FANCG-deficient mouse models were generated with drug-based selection cassettes in mixed mice backgrounds, leading to a disparity in the interpretation of genotype-related phenotype.

View Article and Find Full Text PDF

Mammalian carboxylesterase 1 enzymes can hydrolyze many xenobiotic chemicals and endogenous lipids. We here identified and characterized a mouse strain (FVB/NKI) in which three of the eight Ces1 genes were spontaneously deleted, removing Ces1c and Ces1e partly, and Ces1d entirely. We studied the impact of this Ces1c/d/e deficiency on drug and lipid metabolism and homeostasis.

View Article and Find Full Text PDF

Unlabelled: High expression of the receptor tyrosine kinase AXL is implicated in epithelial-to-mesenchymal transition, cancer progression, and therapy resistance. For example, AXL is abundant in BRAF mutant melanomas progressing on targeted BRAF/MEK inhibition. Therefore, AXL is thought to represent an attractive therapeutic target.

View Article and Find Full Text PDF
Article Synopsis
  • DNA damage poses a serious threat to genomic stability and can lead to stem cell failure.
  • Cells use DNA damage tolerance (DDT) mechanisms, regulated by PCNA ubiquitination and REV1, to handle this damage during DNA replication.
  • The study shows that disrupting both PCNA-ubiquitination and REV1 leads to severe consequences, including lethality and accumulation of DNA damage in hematopoietic stem cells, highlighting DDT's vital role in sustaining stem cell health and mammalian survival.
View Article and Find Full Text PDF

Liver cancer is the fourth most common cause of cancer-related death worldwide, with hepatocellular carcinoma (HCC) being the main primary malignancy affecting the liver. Unfortunately, there are still limited therapeutic options for HCC, and even the latest advances have only increased the overall survival modestly. Thus, new treatment strategies and rational drug combinations are urgently needed.

View Article and Find Full Text PDF

Senolytics, drugs that kill senescent cells, have been proposed to improve the response to pro-senescence cancer therapies; however, this remains challenging due to a lack of broadly acting senolytic drugs. Using CRISPR/Cas9-based genetic screens in different senescent cancer cell models, we identify loss of the death receptor inhibitor cFLIP as a common vulnerability of senescent cancer cells. Senescent cells are primed for apoptotic death by NF-κB-mediated upregulation of death receptor 5 (DR5) and its ligand TRAIL, but are protected from death by increased cFLIP expression.

View Article and Find Full Text PDF

An increasing number of breast cancer patients develop brain metastases (BM). Standard-of-care treatments are largely inefficient, and breast cancer brain metastasis (BCBM) patients are considered untreatable. Immunotherapies are not successfully employed in BCBM, in part because breast cancer is a "cold" tumor and also because the brain tissue has a unique immune landscape.

View Article and Find Full Text PDF