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Soil salinization constitutes a major constraint on global agricultural production, with marked divergence in salt adaptation strategies between salt-tolerant barley () and salt-sensitive rice (). This study systematically investigated the evolution and functional specialization of the C3HC4-type RING zinc finger gene family, known to mediate abiotic stress responses through E3 ubiquitin ligase activity, in these contrasting cereal species. Through comparative genomics, we identified 123 genes and 90 genes, phylogenetically classified into four conserved subgroups. Differences in genes in phylogenetic relationships, chromosomal distribution, gene structure, motif composition, gene duplication events, and -elements in the promoter region were observed between barley and rice. Moreover, in barley tissues preferentially adopted an energy-conserving strategy, which may be a key mechanism for barley's higher salt tolerance. Additionally, we found that genes were evolutionarily conserved in salt-tolerant species. The current results reveal striking differences in salt tolerance between barley and rice mediated by the gene family and offer valuable insight for potential genetic engineering applications in improving crop resilience to salinity stress.
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http://dx.doi.org/10.3390/plants14152404 | DOI Listing |
Plant J
September 2025
Plant Genomics and Breeding Institute, Seoul National University, Seoul, South Korea.
Salt stress impairs photosynthetic efficiency and consequently reduces the growth, development, and grain yield of crop plants. The formation of hydrophobic barriers in the root endodermis, including the suberin lamellae and Casparian strips, is a key adaptive strategy for salt stress tolerance. In this study, we identified the role of the rice NAC transcription factor, ONAC005, in salt stress tolerance.
View Article and Find Full Text PDFArch Microbiol
September 2025
Department of Biological Sciences, Wichita State University, 26, 1845 Fairmount, Wichita, KS, 67260, USA.
Freezing point depression due to high salt concentration is crucial for liquid water to exist on cold worlds, expanding special regions where habitats are plausible. Determination of the growth tolerances of terrestrial microbes in analog systems impacts planetary protection protocols aimed at preventing interference with life detection missions or potential native ecosystems on celestial bodies. We measured the salinity tolerances of 18 salinotolerant bacteria (Bacillus, Halomonas, Marinococcus, Nesterenkonia, Planococcus, Salibacillus, and Terribacillus).
View Article and Find Full Text PDFJ Genet Couns
October 2025
Department of Communication, University of Utah, Salt Lake City, Utah, USA.
With advances in next-generation sequencing technologies, individuals can seek genetic risk information for multiple conditions. However, feasibility and communication challenges could arise if offering multiple genetic tests simultaneously, such as cancer predisposition testing and carrier screening for pregnancy planning. Genetic screening introduces uncertainty from probabilistic results, ambiguous gene-disease associations, and complex variant interpretation, intertwining with psychosocial concerns impacting decision-making and emotional well-being.
View Article and Find Full Text PDFWorld J Microbiol Biotechnol
September 2025
School of Life Sciences, Jawaharlal Nehru University, New Mehrauli Road, New Delhi, 110067, India.
We identified, isolated, and functionally characterized a cyclin-dependent kinase (CDK), PiPho85, from Piriformospora indica. The identified PiPho85 contains TY, PSTAIRE, protein kinase domain, and an ATP binding site which is highly conserved among the Pho85/CDK5 family protein specific for Saccharomyces cerevisiae. In a S.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
September 2025
State Key Laboratory of Microbial Diversity and Innovative Utilization, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China.
The family , encompassing the genus and related taxa, comprises diverse Gram-negative, aerobic, rod-shaped bacteria found in varied habitats, including air, soil, water and glaciers. Recent genomic-based taxonomic revisions have reclassified some species into new genera, such as and , due to polyphyletic relationships within the family . Certain species are known for forming biofilms or functioning as aerobic anoxygenic phototrophic bacteria, traits that enhance resilience in extreme environments like the cryosphere.
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