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While microbial community assembly in saline-alkali topsoils is well-documented, distribution patterns across biochar application depths and soil layers remain unclear. This incubation study evaluated five treatment: no biochar (CK), homogeneous application (EB), and concentrated applications in upper (FB: 0-10 cm), middle (MB: 10-20 cm), or bottom layers (DB: 20-30 cm). Biochar application significantly accelerated vertical salt migration, with FB inducing 45.55 % and 61.01 % increases in water-soluble Na and Cl accumulation in the bottom layer. Microbial network complexity and interspecies interactions were highest in the upper layer (edges: 926), contrasting sharply with simplified communities in deeper layer (edges ≤552). Community assembly across layers was primarily driven by salt gradients, with deep-layer communities dominated by salt-tolerant taxa (such as Halomonas and Desulfobacterota). Among treatments, FB led to the highest biomarker abundance and α-diversity. Mechanistically, FB mitigated microbial diversity loss in mid-deep layers by establishing a symbiotic consortium of salt-tolerant keystone taxa (Bacillus-Pseudomonas-Ascomycota), which enhanced stress resilience via cross-feeding. These findings demonstrate that stratified biochar application (FB) optimizes salt redistribution while fostering stress-adapted microbial consortia across soil profiles, offering a targeted strategy for saline-alkali soil remediation.
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http://dx.doi.org/10.1016/j.jenvman.2025.125574 | DOI Listing |
Proc Natl Acad Sci U S A
September 2025
Department of Zoology, Biodiversity Research Centre, University of British Columbia, Vancouver, BC V6T 1Z4.
The size and composition of local species pools are, in part, determined by past dispersal events. Predicting how communities respond to future disturbances, such as fluctuating environmental conditions, requires knowledge of such histories. We assessed the influence of a historical dispersal event on community assembly by simulating various scales of dispersal for 240 serpentine annual plant communities that experienced a large shift from drought to high rainfall conditions over three years.
View Article and Find Full Text PDFmSystems
September 2025
Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
A significant challenge in the field of microbiology is the functional annotation of novel genes from microbiomes. The increasing pace of sequencing technology development has made solving this challenge in a high-throughput manner even more important. Functional metagenomics offers a sequence-naive and cultivation-independent solution.
View Article and Find Full Text PDFMol Ecol
September 2025
State Key Laboratory of Soil and Water Conservation and Desertification Control, College of Soil and Water Conservation Science and Engineering, Northwest A&F University, Shaanxi, People's Republic of China.
Increasing evidence indicates that the loss of soil microbial α-diversity triggered by environmental stress negatively impacts microbial functions; however, the effects of microbial α-diversity on community functions under environmental stress are poorly understood. Here, we investigated the changes in bacterial and fungal α- diversity along gradients of five natural stressors (temperature, precipitation, plant diversity, soil organic C and pH) across 45 grasslands in China and evaluated their connection with microbial functional traits. By quantifying the five environmental stresses into an integrated stress index, we found that the bacterial and fungal α-diversity declined under high environmental stress across three soil layers (0-20 cm, 20-40 cm and 40-60 cm).
View Article and Find Full Text PDFSynth Biol (Oxf)
August 2025
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, United States.
Modular cloning systems streamline laboratory workflows by consolidating genetic 'parts' into reusable and modular collections, enabling researchers to fast-track strain construction. The GoldenBraid 2.0 modular cloning system utilizes the cutting property of type IIS restriction enzymes to create defined genetic 'grammars', which facilitate the reuse of standardized genetic parts and assembly of genetic parts in the right order.
View Article and Find Full Text PDFEnviron Microbiol Rep
October 2025
Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Quito, Ecuador.
Plant roots are colonised by diverse communities of microorganisms that can affect plant growth and enhance plant resistance to (a) biotic stresses. We investigated the role of the indigenous soil microbiome in the resistance of tomato to the invasive sap-sucking insect Prodiplosis longifila (Diptera: Cecidomyiidae). Native and agricultural soils were sampled from the Andes in Southern Ecuador and tested, in greenhouse bioassays, for leaf tissue damage caused by P.
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