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Model microbial communities are regularly used to test ecological and evolutionary theory as they are easy to manipulate and have fast generation times, allowing for large-scale, high-throughput experiments. A key assumption for most model microbial communities is that they stably coexist, but this is rarely tested experimentally. Here we report the (dis)assembly of a five-species microbial community from a metacommunity of soil microbes that can be used for future experiments. Using reciprocal invasion-from-rare experiments we show that all species can coexist and we demonstrate that the community is stable for a long time (~600 generations). Crucially for future work, we show that each species can be identified by their plate morphologies, even after >1 year in co-culture. We characterise pairwise species interactions and produce high-quality reference genomes for each species. This stable five-species community can be used to test key questions in microbial ecology and evolution.
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http://dx.doi.org/10.1099/mic.0.001489 | DOI Listing |
Sci Rep
August 2025
Department of Community Ecology, Helmholtz Centre for Environmental Research-UFZ, Theodor-Lieser-Str. 4, 06120, Halle (Saale), Germany.
The community composition of plants during succession may follow trajectories driven by the resource-dependent coexistence of plant species. This predicts the convergence of trajectories to resource-dependent transient or stable states. Here, we report the analyses of yearly vegetation surveys between 1987 and 2022 from two pairs of experimental plots on which agricultural use ceased in 1986.
View Article and Find Full Text PDFFood Chem
November 2025
School of Agriculture, Yunnan University, Kunming 650500, China. Electronic address:
Endophytic yeasts are commonly isolated from coffee plants, yet their capacity for mucilage removal remains underexplored. In this study, 42 pectinolytic yeast strains were isolated from coffee cherries and classified into five species. Among them, Pichia kluyveri YE7 showed superior mucilage removal and cold tolerance, achieving complete mucilage degradation within 4-12 h at 5-30 °C.
View Article and Find Full Text PDFBiology (Basel)
June 2025
College of Life Sciences & Technology, Inner Mongolia Normal University, Hohhot 010022, China.
In China, Anostostomatidae is represented by a single tribe, Anabropsini; two genera; and 33 species. Although extensive research has been conducted on Anabropsini, the monophyly of this tribe within Anostostomatidae remains unverified. Furthermore, the phylogenetic relationships within remain under debate.
View Article and Find Full Text PDFPhytochem Anal
July 2025
School of Chinese Medicine, Hong Kong Baptist University, Hong Kong, China.
Background: Uncariae Ramulus cum Uncis (URCU) is a widely used traditional Chinese medicine (TCM) for treating neurodegenerative disorders. The Chinese Pharmacopeia recognizes five Uncaria species as authorized botanical sources of URCU; however, there is currently no established quality control method for individual species. Furthermore, significant variations in the chemical profiles among these species have been reported.
View Article and Find Full Text PDFNat Commun
May 2025
Travaux et Recherches Archéologiques sur les Cultures, les Espaces et les Sociétés (TRACES) UMR 5608, CNRS, Université Toulouse Jean Jaurès, Toulouse, France.
Reconstructing how prehistoric humans used the products obtained from large cetaceans is challenging, but key to understand the history of early human coastal adaptations. Here we report the multiproxy analysis (ZooMS, radiocarbon, stable isotopes) of worked objects made of whale bone, and unworked whale bone fragments, found at Upper Paleolithic sites (Magdalenian) around the Bay of Biscay. Taxonomic identification using ZooMS reveals at least five species of large whales, expanding the range of known taxa whose products were utilized by humans in this period.
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