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Every collected photon is precious in live-cell super-resolution (SR) microscopy. Here, we describe a data-efficient, deep learning-based denoising solution to improve diverse SR imaging modalities. The method, SN2N, is a Self-inspired Noise2Noise module with self-supervised data generation and self-constrained learning process. SN2N is fully competitive with supervised learning methods and circumvents the need for large training set and clean ground truth, requiring only a single noisy frame for training. We show that SN2N improves photon efficiency by one-to-two orders of magnitude and is compatible with multiple imaging modalities for volumetric, multicolor, time-lapse SR microscopy. We further integrated SN2N into different SR reconstruction algorithms to effectively mitigate image artifacts. We anticipate SN2N will enable improved live-SR imaging and inspire further advances.
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http://dx.doi.org/10.1038/s41592-024-02400-9 | DOI Listing |
Unlabelled: Plasma membrane (PM) lipids and proteins are organized into nanoscale regions called nanodomains, which regulate essential cellular processes by controlling local membrane organization. Despite advances in super-resolution microscopy and single particle tracking, the small size and temporal instability of nanodomains make them difficult to study in living cells. To overcome these challenges, we built fluorescent DNA origami probes that insert into the PM via lipid anchors displayed on the cell.
View Article and Find Full Text PDFCell Mol Life Sci
August 2025
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, 08003, Spain.
The 3D organization of the genome plays a critical role in regulating gene expression, maintaining cellular identity, and mediating responses to environmental cues. Advances in super-resolution microscopy and genomic technologies have enabled unprecedented insights into chromatin architecture at nanoscale resolution. However, the complexity and volume of data generated by these techniques necessitate innovative computational strategies for effective analysis and interpretation.
View Article and Find Full Text PDFJ Microsc
August 2025
School of Information and Control Engineering, Southwest University of Science and Technology, Sichuan, China.
Structured illumination microscopy (SIM) as a type of super-resolution optical microscopy technique has been widely used in the fields of biophysics, neuroscience, and cell biology research. However, this technique often requires high-intensity illumination and multiple image acquisitions to generate a single high-resolution image. This process not only significantly reduces the imaging speed, but also increases the exposure time of samples to intense light, leading to increased phototoxicity and photobleaching issues, especially prominent in live cell imaging.
View Article and Find Full Text PDFMethods Mol Biol
August 2025
School of Biological Sciences, National Institute of Science Education and Research, Bhubaneswar, Odisha, India.
The nuclear membrane undergoes continuous remodelling during the life cycle of all eukaryotic cells. The endoplasmic reticulum remains continuous with the nuclear membrane and regulates this nuclear remodelling process. Here in this chapter, we describe in detail a protocol for high-speed imaging of nuclear membrane/endoplasmic reticulum dynamic structure in live cell using fluorescent endoplasmic reticulum resident marker (GFP-KDEL).
View Article and Find Full Text PDFNat Plants
August 2025
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Unlike flagellated sperm in animals, which use molecular motors for motility, immotile sperm cells of angiosperms rely on cytoplasmic transport within pollen tubes to reach female gametes for fertilization. However, the mechanism underlying sperm cell transport in angiosperms remains unknown. Since the 1970s it has been observed that the two sperm cells, or their progenitor generative cell, are transported together with the pollen vegetative nucleus as part of an aggregated structure called the male germ unit, which forms within the pollen cytoplasm.
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