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Convolutional neural networks (CNN) have been broadly studied on images, videos, graphs, and triangular meshes. However, it has seldom been studied on tetrahedral meshes. Given the merits of using volumetric meshes in applications like brain image analysis, we introduce a novel interpretable graph CNN framework for the tetrahedral mesh structure. Inspired by ChebyNet, our model exploits the volumetric Laplace-Beltrami Operator (LBO) to define filters over commonly used graph Laplacian which lacks the Riemannian metric information of 3D manifolds. For pooling adaptation, we introduce new objective functions for localized minimum cuts in the Graclus algorithm based on the LBO. We employ a piece-wise constant approximation scheme that uses the clustering assignment matrix to estimate the LBO on sampled meshes after each pooling. Finally, adapting the Gradient-weighted Class Activation Mapping algorithm for tetrahedral meshes, we use the obtained heatmaps to visualize discovered regions-of-interest as biomarkers. We demonstrate the effectiveness of our model on cortical tetrahedral meshes from patients with Alzheimer's disease, as there is scientific evidence showing the correlation of cortical thickness to neurodegenerative disease progression. Our results show the superiority of our LBO-based convolution layer and adapted pooling over the conventionally used unitary cortical thickness, graph Laplacian, and point cloud representation.
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http://dx.doi.org/10.1007/978-3-031-34048-2_24 | DOI Listing |
Soft Matter
September 2025
Department of Mechanical and Aerospace Engineering, University at Buffalo, Buffalo, NY 14260, USA.
Modeling membrane interactions with arbitrarily shaped colloidal particles, such as environmental micro- and nanoplastics, at the cell scale remains particularly challenging, owing to the complexity of particle geometries and the need to resolve fully coupled translational and rotational dynamics. Here, we present a force-based computational framework capable of capturing dynamic interactions between deformable lipid vesicles and rigid particles of irregular shapes. Both vesicle and particle surfaces are represented using triangulated meshes, and Langevin dynamics resolves membrane deformation alongside rigid-body particle motion.
View Article and Find Full Text PDFIEEE Trans Vis Comput Graph
October 2025
This paper presents a new algorithm, Weighted Squared Volume Minimization (WSVM), for generating high-quality tetrahedral meshes from closed triangle meshes. Drawing inspiration from the principle of minimal surfaces that minimize squared surface area, WSVM employs a new energy function integrating weighted squared volumes for tetrahedral elements. When minimized with constant weights, this energy promotes uniform volumes among the tetrahedra.
View Article and Find Full Text PDFSci Rep
July 2025
State Key Laboratory of Structural Analysis for Industrial Equipment, Department of Engineering Mechanics, Dalian University of Technology, Dalian, 116024, China.
This paper presents a mesh fault-tolerant repair algorithm tailored to address common geometric issues inherent in electromagnetic models. During the actual production design phase, electromagnetic models frequently display a variety of geometric imperfections due to factors such as design errors and model complexity. These imperfections encompass surface leakage, interpenetrating assemblies, contact, excess material, and minute gaps among multiple components.
View Article and Find Full Text PDFSci Rep
July 2025
School of Automation and Software Engineering, Shanxi University, Taiyuan, 030006, Shanxi, China.
A coupled smoothing technique, λS-FEM, is introduced to improve the accuracy of numerical simulations in the mechanical analysis of twist drills. This method combines the edge-based smoothing finite element method (ES-FEM) with the node-based smoothing finite element method (NS-FEM). The λS-FEM model is designed to evaluate the mechanical properties of twist drills made from tungsten carbide (WC), titanium nitride (TiN) coatings, and high-speed steel (M35), providing a theoretical basis for lifespan estimation and wear prediction.
View Article and Find Full Text PDFNumer Algorithms
August 2024
Department of Mathematics and Physics "E. De Giorgi", Via per Arnesano, University of Salento, 73100 Lecce, Italy.
We present a Virtual Element MATLAB solver for elliptic and parabolic, linear and semilinear Partial Differential Equations (PDEs) in two and three space dimensions, which is coined VEMcomp. Such PDEs are widely applicable to describing problems in material sciences, engineering, cellular and developmental biology, among many other applications. The library covers linear and nonlinear models posed on different simple and complex geometries, involving time-dependent bulk, surface, and bulk-surface PDEs.
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