Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

In eukaryotic cells, ribonucleoproteins (RNPs) form mesoscale condensates by liquid-liquid phase separation that play essential roles in subcellular dynamic compartmentalization. The formation and dissolution of many RNP condensates are finely dependent on the RNA-to-RNP ratio, giving rise to a windowlike phase separation behavior. This is commonly referred to as reentrant liquid condensation (RLC). Here, using ribonucleoprotein-inspired polypeptides with low-complexity RNA-binding sequences as well as an archetypal disordered RNP, fused in sarcoma, as model systems, we investigate the molecular driving forces underlying this nonmonotonous phase transition. We show that an interplay between short-range cation-π attractions and long-range electrostatic forces governs the heterotypic RLC behavior of RNP-RNA complexes. Short-range attractions, which can be encoded by both polypeptide chain primary sequence and nucleic acid base sequence, control the two-phase coexistence regime, regulate material properties of polypeptide-RNA condensates, and oppose condensate reentrant dissolution. In the presence of excess RNA, a competition between short-range attraction and long-range electrostatic repulsion drives the formation of a colloidlike cluster phase. With increasing short-range attraction, the fluid dynamics of the cluster phase is arrested, leading to the formation of a colloidal gel. Our results reveal that phase behavior, supramolecular organization, and material states of RNP-RNA assemblies are controlled by a dynamic interplay between molecular interactions at different length scales.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7069731PMC
http://dx.doi.org/10.1021/jacs.9b03689DOI Listing

Publication Analysis

Top Keywords

short-range attraction
12
interplay short-range
8
attraction long-range
8
reentrant liquid
8
liquid condensation
8
phase separation
8
long-range electrostatic
8
cluster phase
8
phase
6
long-range repulsion
4

Similar Publications

We numerically examine the dynamics of a probe particle driven at a constant force through an assembly of particles with competing long-range repulsion and short-range attraction that forms a bubble or stripe state. In the bubble regime, we identify several distinct types of motion, including an elastic or pinned regime where the probe particle remains inside a bubble and drags all other bubbles with it. There is also a plastic bubble phase where the bubble in which the probe particle is trapped is able to move past the adjacent bubbles.

View Article and Find Full Text PDF

Adenosine triphosphate (ATP), a key cellular energy metabolite, has been shown to modulate protein self-assembly processes such as amyloid formation and the behavior of biological condensates through nonspecific, proteome-wide mechanisms. Gaining mechanistic insight into these effects may enable the rational use of multivalent phosphate ions as stabilizing additives for biologics. The stabilizing properties of ATP are often attributed to its hydrotropic character, arising from its combination of a nonpolar adenosine moiety and a highly charged triphosphate group.

View Article and Find Full Text PDF

We study the self-assembly of magnetic colloids using the Stockmayer (SM) model characterized by short-range Lennard-Jones interactions and long-range dipole-dipole interactions. Using molecular dynamics simulations, we design cooling protocols that yield perfectly assembled single-domain magnetic crystals. We identify cooling rates at which the system transforms from an amorphous glass to a crystal, where magnetic ordering promotes crystalline order.

View Article and Find Full Text PDF

Optical wireless communication (OWC) has attracted substantial interest due to its potential for enhanced transmission security and its ability to alleviate spectrum congestion. Here, we propose an information transmission method via single-pixel coherent detection, which realizes coherent OWC with a simple device and low cost. In the method, the information to be transmitted is first encoded into a complex amplitude, which is then divided into a series of sub-complex amplitude using an orthogonal modulation basis.

View Article and Find Full Text PDF

It is demonstrated that the effective scattering length can be highly manipulated via time-periodic driving of a short-range interparticle potential. By developing a Floquet-scattering theory we show that sharp Floquet resonances occur at which the effective interaction can be tuned to very large attractive or repulsive values. The resulting s-wave scattering length can be obtained in analytic form and the shape of these resonances is given by a simple formula describing how resonance position and width can be altered by the driving strength.

View Article and Find Full Text PDF