New species and new records of Trechispora (Trechisporales, Basidiomycota) from Taiwan.

Background: Trechispora (Hydnodontaceae) comprises a diverse group of wood- and soil-inhabiting fungi, primarily functioning as saprotrophs, with some species forming symbiotic associations with plants and animals. Despite the recognition of over 100 species worldwide, its diversity in Taiwan remains understudied. This study presents the first comprehensive taxonomic revision of Trechispora in Taiwan, integrating morphological and phylogenetic analyses based on sequence data from the nuc rDNA internal transcribed spacer ITS1-5.

Multiomics and enzyme activity analyses provide insights into polysaccharide biosynthesis in Laetiporus cremeiporus.

Polysaccharides are a kind of key bioactive compounds in the macrofungal genus Laetiporus. In this study, Laetiporus cremeiporus, an understudied species endemic to East Asia, was investigated using multiomics and enzymatic activity analyses across four mycelial growth periods. A total of 980 metabolites were identified, of which 14 differentially accumulated metabolites were significantly associated with polysaccharide biosynthesis.

DiabetesOmic: A comprehensive multi-omics diabetes database.

Diabetes is a complex disease that involves multiple molecular mechanisms. Recent advances in multi-omics sequencing techniques have significantly enhanced the understanding of the pathogenesis of diabetes. To address the critical need for molecular resources in diabetes research, we present DiabetesOmic (https://bio.

Catalogue of fungi in China 1. New taxa of plant-inhabiting fungi.

China has a huge area of diverse landscapes and is believed to conceive incredibly high fungal diversity. To systematically and promptly report Chinese fungal species, we initiate the series of here. In the first paper of this series, we focus on plant-inhabiting fungi.

Catalogue of fungi in China 3. New taxa of macrofungi from southern Xizang, China.

This is the third paper in the series that aims to systematically and promptly publish Chinese fungal species. In this paper of the series, we focus on macrofungi from the southern border area of Xizang, a previously less concerned region. A total of 15 new species in six orders, 11 families, and 12 genera from , are described.

Annotated Checklist of Poroid Hymenochaetoid Fungi in Central Asia: Taxonomic Diversity, Ecological Roles, and Potential Distribution Patterns.

Central Asia, located at the heart of Eurasia, is renowned for its varied climate and vertical vegetative distribution, which support diverse biomes and position it as a global biodiversity hotspot. Despite this ecological richness, Central Asia's fungal diversity, particularly wood-inhabiting macrofungi, remains largely unexplored. This study investigates the diversity, ecological roles, and potential distribution of poroid Hymenochaetoid fungi in the region.

Discovering Phlebia acerina for efficient degradation of bisphenol S and insights into its degradation mechanism.

Bisphenol S (BPS) has attracted much attention as an emerging hazardous contaminant due to its endocrine disruption and oncogenic effects. Although white-rot fungi have remarkable bioremediation capabilities for some bisphenols, little is known about their performance in BPS degradation. In this study, the newly discovered Phlebia acerina S-LWZ20190614-6 exhibited high capacity to degrade BPS.

FunlncModel: integrating multi-omic features from upstream and downstream regulatory networks into a machine learning framework to identify functional lncRNAs.

Accumulating evidence indicates that long noncoding RNAs (lncRNAs) play important roles in molecular and cellular biology. Although many algorithms have been developed to reveal their associations with complex diseases by using downstream targets, the upstream (epi)genetic regulatory information has not been sufficiently leveraged to predict the function of lncRNAs in various biological processes. Therefore, we present FunlncModel, a machine learning-based interpretable computational framework, which aims to screen out functional lncRNAs by integrating a large number of (epi)genetic features and functional genomic features from their upstream/downstream multi-omic regulatory networks.

Transcriptome and Metabolome Reveal Accumulation of Key Metabolites with Medicinal Properties of .

, a macrofungal species in the , , is known to enhance the nutritional and bioactive properties of rice through co-fermentation; however, its own secondary metabolites are not well understood. In this study, an integrative analysis of transcriptome and metabolome data revealed that the accumulation of steroids, steroid derivatives, and triterpenoids in peaks during the mid-growth stage, while the genes associated with these metabolites show higher expression levels from the early to mid-growth stages. Weighted gene co-expression network analysis identified several modules containing candidate genes involved in the synthesis of steroids, steroid derivatives, and triterpenoids.

Management of post-radiation carotid blowout syndrome in patients with head and neck cancer: A systematic review.

Background And Purpose: Carotid blowout syndrome (CBS) is a rare but potentially life-threatening complication that can occur in patients with head and neck cancer (HNC), especially with a history of radiotherapy. This study aimed to review and initially compare managements for post-radiation CBS in patients with HNC.

Materials And Methods: A systematic review of published studies was performed.

fam. nov. (, ) for gen. et sp. nov. and Three New Combinations.

, belonging to , , comprises most polypores and corticioid fungi and, also, a few agarics. The latest taxonomic framework accepts 14 families in this order. When further exploring species diversity of , two corticioid specimens collected from China producing cystidia with large umbrella-shaped crystalline heads attracted our attention.

Medium composition optimization and characterization of polysaccharides extracted from Ganoderma boninense along with antioxidant activity.

Ganoderma is a well-known medicinal macrofungal genus, of which several species have been thoroughly studied from the medicinal perspective, but most species are rarely involved in. In this study, we focus on the polysaccharides extracted from Ganoderma boninense and their antioxidant activity. Ganoderma boninense is a serious pathogen of oil palms that are cultivated commercially in Southeast Asia.

Preliminary species diversity and community phylogenetics of wood-inhabiting basidiomycetous fungi in the Dabie Mountains, Central China reveal unexpected richness.

Wood-inhabiting fungi have important economic values as well as playing a major ecological role in forest ecosystem cycles. The Dabie Mountains, at the junction of Henan, Hubei, and Anhui Provinces, Central China, provide an ideal climate and favorable niches for the speciation and diversification of various forms of life including fungi. We studied the species diversity and community phylogenetics of wood-inhabiting basidiomycetous fungi that revealed 175 wood-inhabiting basidiomycetous species, of which 20 represented unidentified species, based on morphological and phylogenetic analyses of 575 specimens collected from ten sampling sites.

scATAC-Ref: a reference of scATAC-seq with known cell labels in multiple species.

Chromatin accessibility profiles at single cell resolution can reveal cell type-specific regulatory programs, help dissect highly specialized cell functions and trace cell origin and evolution. Accurate cell type assignment is critical for effectively gaining biological and pathological insights, but is difficult in scATAC-seq. Hence, by extensively reviewing the literature, we designed scATAC-Ref (https://bio.

ord. nov. and fam. nov. for ().

In the era of molecular phylogeny as dominant evidence in fungal taxonomy, the taxonomic framework of fungi adopted from morphological characteristics has been largely updated. Compared with other fungal groups, macrofungi underwent fewer updates at the order and higher level. In this study, the taxonomic placement of a poorly known macro-basidiomycetous genus is studied.

Genome Re-Annotation and Transcriptome Analyses of .

, the generic type of belonging to , is a precious medicinal wood-inhabiting macrofungus with high commercial potential. To facilitate the medicinal utilization of this fungal resource, transcriptome sequences are newly generated from . strain MS2.

SEanalysis 2.0: a comprehensive super-enhancer regulatory network analysis tool for human and mouse.

Super-enhancers (SEs) play an essential regulatory role in various biological processes and diseases through their specific interaction with transcription factors (TFs). Here, we present the release of SEanalysis 2.0 (http://licpathway.

Fungal taxonomy: current status and research agendas for the interdisciplinary and globalisation era.

Fungal taxonomy is a fundamental discipline that aims to recognise all fungi and their kinships. Approximately 5% of a practical estimate of 2.2-3.