Publications by authors named "Dingxue Hu"

Seed weight is a determining factor for improving rapeseed productivity. In the present study, a high-density genetic map was constructed via genome resequencing in an RIL population derived from a cross of two rapeseed varieties, ZS11 and DL704, with great differences in thousand-seed weight (TSW). A total of 1,306 bins involving 1,261,526 markers were used to construct the bin map.

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Proteasome is an essential organelle responsible for maintaining cellular protein homeostasis, but its relationship with DNA methylation remains unknown. In this study, we assessed DNA methylation of colorectal cancer (CRC) cells following treatment with proteasome inhibitors, and investigated the underlying mechanism of DNA methylation changes and the biological effects on CRC cells. We established that inhibition of proteasome leads to significant alterations in DNA methylation profile in CRC by suppressing the synthesis of DNA methyltransferases (DNMTs).

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  • This study explores how the patterns of fragmented cell-free DNA (cfDNA) in plasma can serve as potential biomarkers for cancer diagnosis through liquid biopsies.* -
  • Researchers found that cfDNA fragments located near nucleosomes are shorter and have distinct features, making them useful for targeting tumor-derived cfDNA in cancer patients.* -
  • By creating new cfDNA metrics and applying machine learning, the study developed diagnostic models with high accuracy (0.95 AUC), sensitivity (85.1%), and specificity (95%) for detecting cancer.*
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  • Researchers are studying how to use pieces of DNA found in the blood (called cfDNA) to help diagnose cancer better.
  • They found that using a standard reference for comparing these DNA pieces can lead to mistakes, especially depending on different races.
  • To fix this, they created a new method called Freefly that is much faster and gives more accurate results, which can help doctors diagnose cancer more reliably.
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In cancer treatment, therapeutic strategies that integrate tumor-specific characteristics (i.e., precision oncology) are widely implemented to provide clinical benefits for cancer patients.

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Article Synopsis
  • - Researchers examined the link between genetics, complex diseases, and human longevity by analyzing polygenic risk scores (PRSs) for 225 diseases/traits in a sample of 2,178 centenarians and 2,299 middle-aged individuals.
  • - Findings revealed that centenarians had lower genetic risks for stroke and low blood pressure (hypotension), but higher risks for schizophrenia and type 2 diabetes compared to younger individuals.
  • - The study highlighted that certain genetic factors, like those related to the immune system, could positively impact longevity, while others, particularly associated with kidney issues in diabetes, had detrimental effects, supporting the notion of genetic trade-offs affecting lifespan.
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Helicobacter pylori is a causative pathogen of many gastric and extra-gastric diseases. It has infected about half of the global population. There were no genome-wide association studies (GWAS) for H.

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Root system is essential for plants to absorb water and nutrients. The root related traits are complex quantitative traits and regulated by genetic control. Here, we used two association mapping panels to perform a genome-wide association study (GWAS) on seven root related traits in Brassica napus at the seedling stage and obtained 27 SNP loci significantly associated with the phenotypes.

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Glucosinolates (GSLs) are a major class of secondary metabolites. The content of seed GSL is largely regulated by environments in rapeseed (). However, the genetic control of seed GSL content responsible for environment in has been poorly understood.

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