52 results match your criteria: "Grainger Bioinformatics Center[Affiliation]"
PhytoKeys
August 2025
Grainger Bioinformatics Center, Field Museum of Natural History, Chicago, 60605, Illinois, USA Field Museum of Natural History Chicago United States of America.
is herein described as a new deciduous species endemic to riparian habitats in Jiuzhaigou, northern Sichuan, China. Phylogenetic analyses based on complete plastome sequences and 322 nuclear loci consistently recover as a distinct and divergent lineage, genetically separated from all morphologically similar species and most closely related to . Species delimitation analyses employing both topology-based (SODA) and substitution-based (bPTP, mPTP) frameworks further corroborate its taxonomic distinctiveness.
View Article and Find Full Text PDFFront Microbiol
July 2025
Department of Applied Ecology and Phycology, Institute of Biological Sciences, University of Rostock, Rostock, Germany.
Introduction: A filamentous green alga forming significant biomass on twigs and needles was observed to have increased invasively in Denmark in recent decades. It was particularly abundant in coniferous plantations in western parts of Denmark that experience the highest modelled concentration of atmospheric nitrogen deposition. However, its species identity and taxonomy remained unknown.
View Article and Find Full Text PDFMol Phylogenet Evol
November 2025
The Grainger Bioinformatics Center & Negaunee Integrative Research Center, Collection, Conservation and Research Division, The Field Museum (Chicago, USA), USA.
Evolutionary biologists have long pursued understanding the continuum in which populations flow, interact, and evolve, which can ultimately lead to divergence into distinct species. Lichens, which are often defined as intricate ecosystems, exhibit remarkable evolutionary mechanisms that challenge conventional definitions of speciation. A particularly notable phenomenon in lichens is the species-pair concept, in which closely related taxa only differ in their reproductive strategies - one reproducing sexually, the other asexually.
View Article and Find Full Text PDFEnviron Sci Pollut Res Int
March 2025
Aquatic Science Center, Wisconsin Sea Grant, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Per- and poly-fluoroalkyl substances (PFAS) pose significant health and environmental risks due to their persistence and potential for bioaccumulation. Using a new analytical method, we quantified PFAS in maple sap and syrup from Indigenous lands in the Ceded Territories, a largely under-surveyed area. Our investigation focuses on maple products due to their cultural significance to Ojibwe communities, and economic importance as harvestable resources.
View Article and Find Full Text PDFEnviron Res
July 2025
Aquatic Science Center, Wisconsin Sea Grant, University of Wisconsin-Madison, Madison, WI, USA; Grainger Bioinformatics Center, Field Museum of Natural History, Chicago, IL, USA. Electronic address:
We analyzed concentrations and trends of per- and polyfluoroalkyl substances (PFAS) in 96 nestling bald eagles (Haliaeetus leucocephalus) at six study sites throughout Wisconsin from 2011 to 2017. Nestling blood plasma concentrations of the sum of 11 PFAS analytes (∑ PFAS) differed among study locations: the highest concentration was in the industrialized Green Bay region at study area: Upper Green Bay/Lake Michigan (GBLM; estimated mean = 313.18 μg/L; range = 188.
View Article and Find Full Text PDFSyst Biol
February 2025
Grainger Bioinformatics Center and Negaunee Integrative Research Center, Science and Education, Field Museum of Natural History, 1400 S DuSable Lake Shore Drive, Chicago, IL 60605, USA.
The subphylum Pezizomycotina (filamentous ascomycetes) is the largest clade within Ascomycota. Despite the importance of this group of fungi, our understanding of their evolution is still limited due to insufficient taxon sampling. Although next-generation sequencing technology allows us to obtain complete genomes for phylogenetic analyses, generating complete genomes of fungal species can be challenging, especially when fungi occur in symbiotic relationships or when the DNA of rare herbarium specimens is degraded or contaminated.
View Article and Find Full Text PDFMitochondrial DNA B Resour
January 2025
Negaunee Integrative Research Center, Field Museum, Chicago, IL, USA.
Crimsonwings are estrildid finches found in the understory of montane rainforests of sub-Saharan Africa. The genus includes four species: Sharpe 1902, Sharpe 1902, (Hartlaub 1874), and Reichenow 1892. The first two are endemic to the Albertine Rift, while the latter two are more widespread.
View Article and Find Full Text PDFZool J Linn Soc
November 2024
Department of Earth and Planetary Sciences, The University of Texas at Austin, Austin, TX, USA.
The vocal organ of birds, the syrinx, represents a key innovation in the evolutionary history of vertebrate communication. Three major avian clades: passerines, parrots, and hummingbirds, independently acquired both specialized syringeal structures and vocal-production learning, between which a functional relationship has been proposed but remains poorly understood. In hummingbirds, the syrinx has never been studied comparatively alongside non-learning relatives in the parent clade Strisores.
View Article and Find Full Text PDFBMC Genomics
October 2024
The Grainger Bioinformatics Center & Negaunee Integrative Research Center, Collections, Conservation and Research Division, The Field Museum, Chicago, IL, 60605, USA.
Background: The ubiquity of sex across eukaryotes, given its high costs, strongly suggests it is evolutionarily advantageous. Asexual lineages can avoid, for example, the risks and energetic costs of recombination, but suffer short-term reductions in adaptive potential and long-term damage to genome integrity. Despite these costs, lichenized fungi have frequently evolved asexual reproduction, likely because it allows the retention of symbiotic algae across generations.
View Article and Find Full Text PDFNat Ecol Evol
September 2024
Biology Department, Evolution and Optics of Nanostructures Group, Ghent University, Ghent, Belgium.
Several ecogeographical 'rules' have been proposed to explain colour variation at broad spatial and phylogenetic scales but these rarely consider whether colours are based on pigments or structural colours. However, mechanism can have profound effects on the function and evolution of colours. Here, we combine geographic information, climate data and colour mechanism at broad phylogenetic (9,409 species) and spatial scales (global) to determine how transitions between pigmentary and structural colours influence speciation dynamics and range distributions in birds.
View Article and Find Full Text PDFProc Biol Sci
June 2024
Center for Global Health and Infectious Diseases Research (GHIDR), University of South Florida, Tampa, FL, USA.
J Hered
July 2024
Department of Biology, San Francisco State University, San Francisco, CA 94132-1722, United States.
J Fungi (Basel)
December 2023
The Grainger Bioinformatics Center & Negaunee Integrative Research Center, Collections, Conservation and Research Division, The Field Museum, Chicago, IL 60605, USA.
Commun Biol
October 2023
Committee on Evolution Biology, University of Chicago, Chicago, IL, USA.
Front Public Health
October 2023
Department of Ecology and Evolution, University of Chicago, Chicago, IL, United States.
Introduction: Bats are important providers of ecosystem services such as pollination, seed dispersal, and insect control but also act as natural reservoirs for virulent zoonotic viruses. Bats host multiple viruses that cause life-threatening pathology in other animals and humans but, themselves, experience limited pathological disease from infection. Despite bats' importance as reservoirs for several zoonotic viruses, we know little about the broader viral diversity that they host.
View Article and Find Full Text PDFAm J Bot
October 2023
Naturalis Biodiversity Center, Leiden, The Netherlands.
Premise: The Amazonian hyperdominant genus Eperua (Fabaceae) currently holds 20 described species and has two strongly different inflorescence and flower types, with corresponding different pollination syndrome. The evolution of these vastly different inflorescence types within this genus was unknown and the main topic in this study.
Methods: We constructed a molecular phylogeny, based on the full nuclear ribosomal DNA and partial plastome, using Bayesian inference and maximum likelihood methods, to test whether the genus is monophyletic, whether all species are monophyletic and if the shift from bat to bee pollination (or vice versa) occurred once in this genus.
Aquat Toxicol
July 2023
Aquatic Science Center, Wisconsin Sea Grant, University of Wisconsin-Madison, Madison, WI 53706, United States. Electronic address:
Aquatic herbicides, such as 2,4-dichlorophenoxyacetic acid (2,4-D) formulations, are commonly used for invasive species management throughout the United States. Ecologically relevant concentrations of 2,4-D can impair essential behaviors, reduce survival, and act as an endocrine disruptor; however, there is limited knowledge of its effects on the health of non-target organisms. Here, we investigate the acute and chronic exposure impacts of 2,4-D on adult male and female fathead minnow (Pimephales promelas) innate immune function.
View Article and Find Full Text PDFElife
April 2023
Department of Biology and Museum of Southwestern Biology, University of New Mexico, Albuquerque, United States.
Colorful signals in nature provide some of the most stunning examples of rapid phenotypic evolution. Yet, studying color pattern evolution has been historically difficult owing to differences in perceptual ability of humans and analytical challenges with studying how complex color patterns evolve. Island systems provide a natural laboratory for testing hypotheses about the direction and magnitude of phenotypic change.
View Article and Find Full Text PDFR Soc Open Sci
March 2023
Negaunee Integrative Research Center, Field Museum of Natural History, 1400 S Lake Shore Drive, Chicago, IL 60605, USA.
Hybridization is a known source of morphological, functional and communicative signal novelty in many organisms. Although diverse mechanisms of established novel ornamentation have been identified in natural populations, we lack an understanding of hybridization effects across levels of biological scales and upon phylogenies. Hummingbirds display diverse structural colours resulting from coherent light scattering by feather nanostructures.
View Article and Find Full Text PDFMycoKeys
November 2022
Negaunee Integrative Research Center and Grainger Bioinformatics Center, Field Museum of Natural History, 1400 S. DuSable Lake Shore Drive, Chicago, IL, 60605, USA Field Museum of Natural History Chicago United States of America.
Tropical regions harbor a substantial diversity of lichenized fungi, but face numerous threats to their persistence, often even before previously unknown species have been described and their evolutionary relationships have been elucidated. (Ramalinaceae) is a lichen-forming genus of fungi that produces crustose thalli, and includes a number of lineages occupying tropical rain forests; however, taxonomic and phylogenetic work on this clade is limited. Here we leverage both morphological and sequence data to describe a new species from the tropics, .
View Article and Find Full Text PDFiScience
January 2023
Physics & Astronomy Department, Haverford College, Haverford, PA 19041, USA.
Currently known structural colors in feathers are caused by light scattering from periodic or amorphous arrangements of keratin, melanin, and air within barbs and barbules that comprise the feather vane. Structural coloration in the largest part of the feather, the central rachis, is rare. Here, we report on an investigation of the physical mechanisms underlying the only known case of structural coloration in the rachis, the blue rachis of great argus ( flight feathers.
View Article and Find Full Text PDFJ Fungi (Basel)
January 2023
The Grainger Bioinformatics Center & Negaunee Integrative Research Center, Science & Education, The Field Museum, Chicago, IL 60605, USA.
Nearly 90% of fungal diversity, one of the most speciose branches in the tree of life, remains undescribed. Lichenized fungi as symbiotic associations are still a challenge for species delimitation, and current species diversity is vastly underestimated. The ongoing democratization of Next-Generation Sequencing is turning the tables.
View Article and Find Full Text PDFEvolution
February 2023
Jackson School of Geosciences, The University of Texas at Austin, Austin, TX, United States.
High disparity among avian forelimb and hind limb segments in crown birds relative to non-avialan theropod dinosaurs, potentially driven by the origin of separate forelimb and hind limb locomotor modules, has been linked to the evolution of diverse avian locomotor behaviors. However, this hypothesized relationship has rarely been quantitatively investigated in a phylogenetic framework. We assessed the relationship between the evolution of limb morphology and locomotor behavior by comparing a numerical proxy for locomotor disparity to morphospace sizes derived from a dataset of 1,241 extant species.
View Article and Find Full Text PDFAm J Bot
February 2023
Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, Minnesota, 55108, USA.
Premise: The long-term potential for acclimation by lichens to changing climates is poorly known, despite their prominent roles in forested ecosystems. Although often considered "extremophiles," lichens may not readily acclimate to novel climates well beyond historical norms. In a previous study (Smith et al.
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