52 results match your criteria: "Grainger Bioinformatics Center[Affiliation]"

 (Berberidaceae), a new riparian shrub from northern Sichuan, China.

PhytoKeys

August 2025

Grainger Bioinformatics Center, Field Museum of Natural History, Chicago, 60605, Illinois, USA Field Museum of Natural History Chicago United States of America.

is herein described as a new deciduous species endemic to riparian habitats in Jiuzhaigou, northern Sichuan, China. Phylogenetic analyses based on complete plastome sequences and 322 nuclear loci consistently recover as a distinct and divergent lineage, genetically separated from all morphologically similar species and most closely related to . Species delimitation analyses employing both topology-based (SODA) and substitution-based (bPTP, mPTP) frameworks further corroborate its taxonomic distinctiveness.

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Introduction: A filamentous green alga forming significant biomass on twigs and needles was observed to have increased invasively in Denmark in recent decades. It was particularly abundant in coniferous plantations in western parts of Denmark that experience the highest modelled concentration of atmospheric nitrogen deposition. However, its species identity and taxonomy remained unknown.

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Evolutionary biologists have long pursued understanding the continuum in which populations flow, interact, and evolve, which can ultimately lead to divergence into distinct species. Lichens, which are often defined as intricate ecosystems, exhibit remarkable evolutionary mechanisms that challenge conventional definitions of speciation. A particularly notable phenomenon in lichens is the species-pair concept, in which closely related taxa only differ in their reproductive strategies - one reproducing sexually, the other asexually.

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Per- and poly-fluoroalkyl substances (PFAS) pose significant health and environmental risks due to their persistence and potential for bioaccumulation. Using a new analytical method, we quantified PFAS in maple sap and syrup from Indigenous lands in the Ceded Territories, a largely under-surveyed area. Our investigation focuses on maple products due to their cultural significance to Ojibwe communities, and economic importance as harvestable resources.

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Longitudinal trends of per- and poly-fluoroalkyl substances (PFAS) in nestling bald eagles (Haliaeetus leucocephalus) from Wisconsin.

Environ Res

July 2025

Aquatic Science Center, Wisconsin Sea Grant, University of Wisconsin-Madison, Madison, WI, USA; Grainger Bioinformatics Center, Field Museum of Natural History, Chicago, IL, USA. Electronic address:

We analyzed concentrations and trends of per- and polyfluoroalkyl substances (PFAS) in 96 nestling bald eagles (Haliaeetus leucocephalus) at six study sites throughout Wisconsin from 2011 to 2017. Nestling blood plasma concentrations of the sum of 11 PFAS analytes (∑ PFAS) differed among study locations: the highest concentration was in the industrialized Green Bay region at study area: Upper Green Bay/Lake Michigan (GBLM; estimated mean = 313.18 μg/L; range = 188.

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The subphylum Pezizomycotina (filamentous ascomycetes) is the largest clade within Ascomycota. Despite the importance of this group of fungi, our understanding of their evolution is still limited due to insufficient taxon sampling. Although next-generation sequencing technology allows us to obtain complete genomes for phylogenetic analyses, generating complete genomes of fungal species can be challenging, especially when fungi occur in symbiotic relationships or when the DNA of rare herbarium specimens is degraded or contaminated.

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Crimsonwings are estrildid finches found in the understory of montane rainforests of sub-Saharan Africa. The genus includes four species: Sharpe 1902, Sharpe 1902, (Hartlaub 1874), and Reichenow 1892. The first two are endemic to the Albertine Rift, while the latter two are more widespread.

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The vocal organ of birds, the syrinx, represents a key innovation in the evolutionary history of vertebrate communication. Three major avian clades: passerines, parrots, and hummingbirds, independently acquired both specialized syringeal structures and vocal-production learning, between which a functional relationship has been proposed but remains poorly understood. In hummingbirds, the syrinx has never been studied comparatively alongside non-learning relatives in the parent clade Strisores.

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Background: The ubiquity of sex across eukaryotes, given its high costs, strongly suggests it is evolutionarily advantageous. Asexual lineages can avoid, for example, the risks and energetic costs of recombination, but suffer short-term reductions in adaptive potential and long-term damage to genome integrity. Despite these costs, lichenized fungi have frequently evolved asexual reproduction, likely because it allows the retention of symbiotic algae across generations.

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Several ecogeographical 'rules' have been proposed to explain colour variation at broad spatial and phylogenetic scales but these rarely consider whether colours are based on pigments or structural colours. However, mechanism can have profound effects on the function and evolution of colours. Here, we combine geographic information, climate data and colour mechanism at broad phylogenetic (9,409 species) and spatial scales (global) to determine how transitions between pigmentary and structural colours influence speciation dynamics and range distributions in birds.

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Article Synopsis
  • Empirical data on how body mass impacts immune defense against infections is sparse; larger organisms were previously thought to have weaker immune responses, but new studies suggest they may actually have stronger defenses.
  • The safety factor hypothesis proposes that larger organisms evolved stronger immune systems due to their higher risk of exposure to pathogens.
  • In this study, researchers found that larger primates showed a greater increase in the expression of immune genes in response to infection compared to smaller primates, supporting the safety factor hypothesis and highlighting the complex relationship between body size and immunity.
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  • The Galapagos rail has lost flight ability since colonizing the Galapagos Islands about 1.2 million years ago and has faced severe habitat loss due to overgrazing by introduced goats, resulting in declining populations and reduced genetic diversity.
  • Researchers investigated the evolutionary history and genetic distribution of Galapagos rails across different islands, revealing distinct populations and isolation events linked to the separation of landmasses.
  • The study highlights that long runs of homozygosity in the rails' genomes likely stem from historical population bottlenecks and emphasizes the importance of goat eradication to prevent inbreeding in surviving rail populations.
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  • Cryptic species in lichen-forming fungi are prevalent, particularly within the Parmeliaceae family.
  • Researchers focused on asexually reproducing species to clarify their classification and found notable genetic diversity among them.
  • By analyzing genome-wide SNP data, they identified four distinct clades as separate species, including two new species, contributing to a better understanding of their evolutionary relationships.
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  • Understanding convergence in genetics, particularly in kingfishers, is vital for exploring how behaviors impact genomic evolution.
  • Whole-genome sequencing of 30 kingfisher species highlights differences in molecular evolution impacted by their habitat ranges—island species show more fluctuations than continental ones.
  • The study identifies positive selection and genomic convergence in brain and dietary genes among plunge-diving kingfishers, linking genetic changes to their unique feeding behaviors.
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Introduction: Bats are important providers of ecosystem services such as pollination, seed dispersal, and insect control but also act as natural reservoirs for virulent zoonotic viruses. Bats host multiple viruses that cause life-threatening pathology in other animals and humans but, themselves, experience limited pathological disease from infection. Despite bats' importance as reservoirs for several zoonotic viruses, we know little about the broader viral diversity that they host.

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Premise: The Amazonian hyperdominant genus Eperua (Fabaceae) currently holds 20 described species and has two strongly different inflorescence and flower types, with corresponding different pollination syndrome. The evolution of these vastly different inflorescence types within this genus was unknown and the main topic in this study.

Methods: We constructed a molecular phylogeny, based on the full nuclear ribosomal DNA and partial plastome, using Bayesian inference and maximum likelihood methods, to test whether the genus is monophyletic, whether all species are monophyletic and if the shift from bat to bee pollination (or vice versa) occurred once in this genus.

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Aquatic herbicides, such as 2,4-dichlorophenoxyacetic acid (2,4-D) formulations, are commonly used for invasive species management throughout the United States. Ecologically relevant concentrations of 2,4-D can impair essential behaviors, reduce survival, and act as an endocrine disruptor; however, there is limited knowledge of its effects on the health of non-target organisms. Here, we investigate the acute and chronic exposure impacts of 2,4-D on adult male and female fathead minnow (Pimephales promelas) innate immune function.

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Colorful signals in nature provide some of the most stunning examples of rapid phenotypic evolution. Yet, studying color pattern evolution has been historically difficult owing to differences in perceptual ability of humans and analytical challenges with studying how complex color patterns evolve. Island systems provide a natural laboratory for testing hypotheses about the direction and magnitude of phenotypic change.

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Hybridization is a known source of morphological, functional and communicative signal novelty in many organisms. Although diverse mechanisms of established novel ornamentation have been identified in natural populations, we lack an understanding of hybridization effects across levels of biological scales and upon phylogenies. Hummingbirds display diverse structural colours resulting from coherent light scattering by feather nanostructures.

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A new species of (Ramalinaceae, Ascomycota) from Thailand, and recognition of subgenus Catillochroma.

MycoKeys

November 2022

Negaunee Integrative Research Center and Grainger Bioinformatics Center, Field Museum of Natural History, 1400 S. DuSable Lake Shore Drive, Chicago, IL, 60605, USA Field Museum of Natural History Chicago United States of America.

Tropical regions harbor a substantial diversity of lichenized fungi, but face numerous threats to their persistence, often even before previously unknown species have been described and their evolutionary relationships have been elucidated. (Ramalinaceae) is a lichen-forming genus of fungi that produces crustose thalli, and includes a number of lineages occupying tropical rain forests; however, taxonomic and phylogenetic work on this clade is limited. Here we leverage both morphological and sequence data to describe a new species from the tropics, .

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Currently known structural colors in feathers are caused by light scattering from periodic or amorphous arrangements of keratin, melanin, and air within barbs and barbules that comprise the feather vane. Structural coloration in the largest part of the feather, the central rachis, is rare. Here, we report on an investigation of the physical mechanisms underlying the only known case of structural coloration in the rachis, the blue rachis of great argus ( flight feathers.

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Nearly 90% of fungal diversity, one of the most speciose branches in the tree of life, remains undescribed. Lichenized fungi as symbiotic associations are still a challenge for species delimitation, and current species diversity is vastly underestimated. The ongoing democratization of Next-Generation Sequencing is turning the tables.

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High disparity among avian forelimb and hind limb segments in crown birds relative to non-avialan theropod dinosaurs, potentially driven by the origin of separate forelimb and hind limb locomotor modules, has been linked to the evolution of diverse avian locomotor behaviors. However, this hypothesized relationship has rarely been quantitatively investigated in a phylogenetic framework. We assessed the relationship between the evolution of limb morphology and locomotor behavior by comparing a numerical proxy for locomotor disparity to morphospace sizes derived from a dataset of 1,241 extant species.

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Premise: The long-term potential for acclimation by lichens to changing climates is poorly known, despite their prominent roles in forested ecosystems. Although often considered "extremophiles," lichens may not readily acclimate to novel climates well beyond historical norms. In a previous study (Smith et al.

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Article Synopsis
  • The flowering plant genus includes around 300 species, with coca being a key crop for both economic and social purposes.
  • Genome sequences of two specific cultigens used for medicinal and everyday needs in the Andes and Amazon regions have been sequenced using advanced technology.
  • The resulting data has been made publicly available in GenBank for researchers and interested parties to access.
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