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The insufficient high- throughput modeling capability for high-dimensional, multiscale, and nonlinear real-world observations and measurements stands as one of the major impediments for modern science advancements. In this regard, machine learning holds tremendous promise for transforming the fundamental practice of scientific discovery by virtue of its data-driven disposition. With the ever-increasing stream of research data collection, it would be appealing to automate the exploration of patterns and insights from observational data for discovering novel classes of phenotypes and entities. However, in the discipline of biomedical investigation, the cumulative data is intrinsically subjected to non-i.i.d. distribution and severe biases amongst different clusters, inducing disorganization and ambiguity in the learned representation space. To contend with the inherent challenges, in this paper, we present a geometry- constrained probabilistic modeling treatment on hyperspherical manifolds. It firstly parameterizes the approximated posterior of instance- wise embedding as a marginal von MisesFisher distribution to account for the interference of distributional latent shift, and thereafter incorporates a suite of critical inductive biases to organically shape the layout of tailored embedding space. Together, these advancements offer a systematic solution to regularize the uncontrollable risk for unseen class learning and prospecting. Furthermore, we propose a spectral graph-theoretic method to efficiently estimate the number of potential novel classes and endow the prediction with adorable taxonomy adaptability. Through extensive experiments under various settings, we demonstrate the effectiveness and general applicability of the proposed methods in recognizing and structurally phenotyping novel visual concepts.
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http://dx.doi.org/10.1109/TPAMI.2025.3596597 | DOI Listing |
Nucleic Acids Res
September 2025
Department of Chemistry and Henry Eyring Center for Cell and Genome Science, University of Utah, Salt Lake City, UT 84112, United States.
Glycine is an important metabolite and cell signal in diverse organisms, yet tools to visualize intracellular glycine dynamics have not been developed. In this study, diverse and bright RNA-based glycine biosensors were developed by fusing the architecturally complex glycine riboswitch with Broccoli class fluorogenic aptamers. The brightest sensor with the highest activation, glyS, and its two-dye ratiometric counterpart, Pepper-glyS, allowed for visualization of a drug-induced accumulation of endogenous glycine in live Escherichia colicells.
View Article and Find Full Text PDFExp Gerontol
September 2025
Department of Nutrition and Integrative Physiology, University of Utah, Salt Lake City, UT, USA; Salk Institute for Biological Studies, La Jolla, CA, 92037, USA; Department of Molecular Biology, University of Utah, Salt Lake City, UT, USA; Department of Biochemistry, University of Utah, Salt Lake Ci
Aging is the greatest risk factor for cardiovascular diseases (CVD) and is characterized by inflammation, oxidative stress, and cellular senescence. Cellular senescence is a state of persistent cell cycle arrest triggered by stressors such as DNA damage and telomere attrition. Senescent endothelial cells (ECs) can impair vascular function and promote inflammation, thereby contributing to CVD progression.
View Article and Find Full Text PDFBiochim Biophys Acta Rev Cancer
September 2025
School of Applied Sciences, Suresh Gyan Vihar University, Jaipur 302017, Rajasthan, India. Electronic address:
Cancer has been one of the primary causes of mortality for the last three decades across the globe, with contemporary treatment modalities often falling short due to limitations viz. drug resistance, toxicity, and the inability to target molecular mechanisms of tumor progression. Among various intracellular mediators implicated in cancer progression, heparanase, a heparan sulfate degrading enzyme, has been pivotal by facilitating tumor invasion, angiogenesis, and metastasis.
View Article and Find Full Text PDFFood Chem
September 2025
Institute of Quality Standard and Testing Technology for Agro-products, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Fluoroquinolones are a popular class of antibiotics, which can lead to residues in food and the environment due to their abuse and illegal use. Consequently, this can pose a threat to human health. We hypothesized that a core-shell structured magnetic lanthanide metal-organic framework could serve as an effective dual-mode nanosensor, leveraging its antenna effect and peroxidase (POD)-like activity for the sensitive detection of fluoroquinolones.
View Article and Find Full Text PDFComput Methods Programs Biomed
September 2025
Key Laboratory of Social Computing and Cognitive Intelligence (Ministry of Education), Dalian University of Technology, Dalian, 116024, China; School of Computer Science and Technology, Dalian University of Technology, Dalian, 116024, China. Electronic address:
Background And Objective: Few-shot learning has emerged as a key technological solution to address challenges such as limited data and the difficulty of acquiring annotations in medical image classification. However, relying solely on a single image modality is insufficient to capture conceptual categories. Therefore, medical image classification requires a comprehensive approach to capture conceptual category information that aids in the interpretation of image content.
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