Spatial control of mA deposition on enhancer and promoter RNAs through co-acetylation of METTL3 and H3K27 on chromatin.

Mol Cell

Department of Histoembryology and Cell Biology, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou 510080, China; Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou 510080, C

Published: April 2025


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Article Abstract

Interaction between the N-methyladenosine (mA) methyltransferase METTL3 and METTL14 is critical for METTL3 to deposit mA on various types of RNAs. It remains to be uncovered whether there is spatial control of mA deposition on different types of RNAs. Here, through genome-wide CRISPR-Cas9 screening in the A549 cell line, we find that H3K27ac acetylase p300-mediated METTL3 acetylation suppresses the binding of METTL3 on H3K27ac-marked chromatin by inhibiting its interaction with METTL14. Consistently, p300 catalyzing the acetylation of METTL3 specifically occurs on H3K27ac-marked chromatin. Disruptive mutations on METTL3 acetylation sites selectively promote the mA of chromatin-associated RNAs from p300-bound enhancers and promoters marked by H3K27ac, resulting in transcription inhibition of ferroptosis-inhibition-related genes. In addition, PAK2 promotes METTL3 acetylation by phosphorylating METTL3. Inhibition of PAK2 promotes ferroptosis in a manner that depends on the acetylation of METTL3. Our study reveals a spatial-selective way to specifically regulate the deposition of mA on enhancer and promoter RNAs.

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http://dx.doi.org/10.1016/j.molcel.2025.02.016DOI Listing

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