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Biocementation, driven by ureolytic bacteria and their biochemical activities, has evolved as a powerful technology for soil stabilization, crack repair, and bioremediation. Ureolytic bacteria play a crucial role in calcium carbonate precipitation through their enzymatic activity, hydrolyzing urea to produce carbonate ions and elevate pH, thus creating favorable conditions for the precipitation of calcium carbonate. While extensive research has explored the ability of ureolytic bacteria isolated from natural environments or culture conditions, bacterial synergy is often unexplored or under-reported. In this study, we isolated bacterial strains from the local eutrophic river canal and evaluated their suitability for precipitating calcium carbonate polymorphs. We identified two distinct bacterial isolates with superior urea degradation ability (conductivity method) using partial 16 S rRNA gene sequencing. Molecular identification revealed that they belong to the Comamonas and Bacillus genera. Urea degradation analysis was performed under diverse pH (6,7 and 8) and temperature (15 °C,20 °C,25 °C and 30 °C) ranges, indicating that their ideal pH is 7 and temperature is 30 °C since 95% of the urea was degraded within 96 h. In addition, we investigated these strains individually and in combination, assessing their microbially induced carbonate precipitation (MICP) in silicate fine sand under low (14 ± 0.6 °C) and ideal temperature 30 °C conditions, aiming to optimize bio-mediated soil enhancement. Results indicated that 30 °C was the ideal temperature, and combining bacteria resulted in significant (p ≤ 0.001) superior carbonate precipitation (14-16%) and permeability (> 10 m/s) in comparison to the average range of individual strains. These findings provide valuable insights into the potential of combining ureolytic bacteria for future MICP research on field applications including soil erosion mitigation, soil stabilization, ground improvement, and heavy metal remediation.
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http://dx.doi.org/10.1007/s11274-024-04038-3 | DOI Listing |
Sci Rep
August 2025
School of Civil and Mechanical Engineering, Curtin University, Perth, Australia.
Bacterial mineralisation of calcium carbonates (CaCO) has become a focal point of interest in the scientific community owing to their versatile applications as biomaterials. However, despite extensive research, the knowledge on factors influencing biogenic CaCO polymorph (calcite, vaterite or aragonite) selection in nature remains obscure. Bacterial mineralisation happens in nature on diverse substrates by different pathways, often in the presence of organic matter such as biofilm and extracellular polymeric substances (EPS) secreted with the regular metabolic activities of microbes.
View Article and Find Full Text PDFMicrobiol Res
July 2025
Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Key Lab of Organic-Based Fertilizers of China, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, Ch
Crop domestication has long been known to reshape rhizosphere microbial communities, yet research has focused disproprotionately on bacteria and fungal responses to crop domestication while neglecting protist communities. Protists, as key microbial predators regulating bacterial populations and thereby their functionalities, remain understudied in this context. Here, we investigate the influence of soybean domestication on both bacterial and protist communities, with a focus on the reorganization of ecological strategies, specifically generalists and specialists, within these microbiomes.
View Article and Find Full Text PDFWorld J Microbiol Biotechnol
August 2025
Facultad de Ciencias, Departamento de Química, Grupo de Estudios para la Remediación y Mitigación de Impactos Negativos al Ambiente (GERMINA), Universidad Nacional de Colombia - sede Bogotá, Carrera 30 # 45- 03, Bogotá, Colombia.
This work reports the isolation of 54 ureolytic bacteria with microbiologically induced carbonate precipitation (MICP) activity from Theobroma cacao L. rhizosphere soils with Cd concentration ranging from 0.49 to 21.
View Article and Find Full Text PDFSci Rep
August 2025
Geotechnical Institute, TU Bergakademie Freiberg, Freiberg, Germany.
In order to address the challenges of the modern era, such as population growth and greenhouse gas emissions, sustainable soil improvement techniques have been in high demand. In a quest to find more sustainable ground improvement methods, microbially induced carbonate precipitation (MICP) and enzyme-induced carbonate precipitation (EICP) have attracted researchers worldwide. For the first time, this study investigates a non-ureolytic enzyme-induced carbonate precipitation method using formate dehydrogenase (FDH) as a sustainable approach for soil stabilization.
View Article and Find Full Text PDFBioorg Chem
August 2025
Laboratório de Moléculas Bioativas, Department of Chemistry, State University of Londrina, P.O. Box 10.011, Londrina, PR, Brazil. Electronic address:
Studies on ligand-enzyme binding modes on functional microorganism ureases are currently unexplored mainly due to the difficulties in obtaining purified native or recombinant microbial ureases. The investigation of interactions with small ligands, kinetic parameters and most of inhibitor screening is usually performed using the commercially available plant urease model. Herein, the unique urease paramagnetic Ni(II) bimetallic center and saturation transfer from protein to ligand protons were explored by NMR to access the ligand-urease binding profile in Cryptococcus neoformans cell lysates.
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