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http://dx.doi.org/10.1038/d41586-023-02631-4 | DOI Listing |
Mol Phylogenet Evol
September 2025
School of Ecology and Environmental Science, Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology and Institute of Biodiversity, School of Life Sciences, Yunnan University, Kunming 650504 Yunnan, China. Electronic address:
The advent of high-throughput genomic sequencing has provided unprecedented access to genome-scale data. This deluge of data has yielded new insights into phylogenetic relationships across the tree of life. However, incongruent results arising from different data partitions or from the use of different analyses have often been overlooked or insufficiently explored.
View Article and Find Full Text PDFNat Commun
September 2025
Ecology, Department of Biology, University of Konstanz, Konstanz, Germany.
Due to anthropogenic pressure some species have declined whereas others have increased within their native ranges. Simultaneously, many species introduced by humans have established self-sustaining populations elsewhere (i.e.
View Article and Find Full Text PDFJ Environ Manage
September 2025
Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy.
Agriculture has played a pivotal role in shaping European mountain biodiversity. Traditional practices, characterized by low intensity and crop mosaics, have historically created complex, heterogeneous landscapes that supported a high biodiversity level. Agricultural intensification has turned these traditional crop systems into artificial habitats, leading to increased field sizes, habitat fragmentation, and decrease of habitat heterogeneity, contributing to the current farmland biodiversity crisis.
View Article and Find Full Text PDFVet Microbiol
August 2025
Ecology of the Global Microbiome-Department of Ecology and Complexity, Centre of Advanced Studies of Blanes-Spanish Council for Research CEAB-CSIC, Blanes, Spain. Electronic address:
The new variant of rabbit haemorrhagic disease virus (RHDV2 or RHDVb) is responsible for a lethal, emerging infectious disease in several species of lagomorphs, and is globally threatening wild rabbit populations. It is known that the gut microbiota plays a crucial role in modulating host health, including immune responses and disease susceptibility. We hypothesize potential association of gut microbiota with the epidemiological dynamics of RHDV2 outbreaks that may provide key insights into how this lethal, emerging pathogen impacts wild rabbit populations.
View Article and Find Full Text PDFGigascience
January 2025
Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.
Background: The Earth Hologenome Initiative (EHI) is a global endeavor dedicated to revisit fundamental ecological and evolutionary questions from the systemic host-microbiota perspective, through the standardized generation and analysis of joint animal genomic and associated microbial metagenomic data.
Results: The first data release of the EHI contains 968 shotgun DNA sequencing read files containing 5.2 TB of raw genomic and metagenomic data derived from 21 vertebrate species sampled across 12 countries, as well as 17,666 metagenome-assembled genomes reconstructed from these data.