Category Ranking
98%
Total Visits
921
Avg Visit Duration
2 minutes
Citations
20
Article Abstract
Salinity is a major abiotic stress that causes substantial agricultural losses worldwide. Chickpea ( L.) is an important legume crop but is salt-sensitive. Previous physiological and genetic studies revealed the contrasting response of two desi chickpea varieties, salt-sensitive Rupali and salt-tolerant Genesis836, to salt stress. To understand the complex molecular regulation of salt tolerance mechanisms in these two chickpea genotypes, we examined the leaf transcriptome repertoire of Rupali and Genesis836 in control and salt-stressed conditions. Using linear models, we identified categories of differentially expressed genes (DEGs) describing the genotypic differences: salt-responsive DEGs in Rupali (1,604) and Genesis836 (1,751) with 907 and 1,054 DEGs unique to Rupali and Genesis836, respectively, salt responsive DEGs (3,376), genotype-dependent DEGs (4,170), and genotype-dependent salt-responsive DEGs (122). Functional DEG annotation revealed that the salt treatment affected genes involved in ion transport, osmotic adjustment, photosynthesis, energy generation, stress and hormone signalling, and regulatory pathways. Our results showed that while Genesis836 and Rupali have similar primary salt response mechanisms (common salt-responsive DEGs), their contrasting salt response is attributed to the differential expression of genes primarily involved in ion transport and photosynthesis. Interestingly, variant calling between the two genotypes identified SNPs/InDels in 768 Genesis836 and 701 Rupali salt-responsive DEGs with 1,741 variants identified in Genesis836 and 1,449 variants identified in Rupali. In addition, the presence of premature stop codons was detected in 35 genes in Rupali. This study provides valuable insights into the molecular regulation underpinning the physiological basis of salt tolerance in two chickpea genotypes and offers potential candidate genes for the improvement of salt tolerance in chickpeas.
Download full-text PDF |
Source |
|---|---|
| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10289292 | PMC |
| http://dx.doi.org/10.3389/fpls.2023.1191457 | DOI Listing |
Publication Analysis
Top Keywords
Similar Publications
Isolation and Characterisation of Bacteria From an Extremely High Boron and Salinity-Tolerant Puccinellia distans (Jacq.) Parl. Rhizosphere and Their Potential Impact on the Growth of Bread Wheat (Triticum aestivum L.).
Environ Microbiol Rep
October 2025
Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya, Türkiye.
Boron toxicity and salinity are major abiotic stress factors that cause significant yield losses, particularly in arid and semi-arid regions. Hyperaccumulator plants, such as Puccinella distans (Jacq.) Parl.
View Article and Find Full Text PDFHigh-resolution time-series transcriptomic and metabolomic profiling reveals the regulatory mechanism underlying salt tolerance in maize.
Genome Biol
September 2025
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.
Background: Soil salinization represents a critical global challenge to agricultural productivity, profoundly impacting crop yields and threatening food security. Plant salt-responsive is complex and dynamic, making it challenging to fully elucidate salt tolerance mechanism and leading to gaps in our understanding of how plants adapt to and mitigate salt stress.
Results: Here, we conduct high-resolution time-series transcriptomic and metabolomic profiling of the extremely salt-tolerant maize inbred line, HLZY, and the salt-sensitive elite line, JI853.
Integrative multi-omics and genomic prediction reveal genetic basis of early salt tolerance in alfalfa.
J Genet Genomics
September 2025
State Key Laboratory of Tropical Crop Breeding, Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangd
The genetic basis of early-stage salt tolerance in alfalfa (Medicago sativa L.), a key factor limiting its productivity, remains poorly understand. To dissect this complex trait, we integrate genome-wide association study (GWAS) and transcriptomics (RNA-seq) from 176 accessions within a machine learning based genomic prediction framework.
View Article and Find Full Text PDFGenome-wide identification and functional characterization of rapid alkalinization factor 6 as a key peptide regulator of abiotic stress tolerance in Tartary buckwheat.
Plant Sci
September 2025
Key Laboratory of Coarse Cereal Processing, Ministry of Agriculture and Rural Affairs, Sichuan Engineering and Technology Research Center of Coarse Cereal Industrialization, Institute for Advanced Study, Chengdu University, Chengdu, Sichuan, China. Electronic address:
Rapid alkalinization factors (RALFs) are cysteine-rich signaling peptides in plants that play critical roles in development, immune regulation, and responses to abiotic stress. Despite their importance, the functional characterization of RALF family members in Tartary buckwheat (Fagopyrum tataricum), a nutrient-rich crop known for its remarkable resilience to multiple stresses, remains largely unexplored. In this study, we conducted a comprehensive genome-wide analysis to identify and characterize the FtRALF gene family in Tartary buckwheat, examining their phylogenetic relationships, gene structures, and duplication events.
View Article and Find Full Text PDFComplete genome sequence of strain MNA2.1 isolated from sediments of the Berre lagoon, France.
Microbiol Resour Announc
September 2025
Aix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France.
We report the complete genome sequence of strain MNA2.1, isolated from coastal sediments of the Berre lagoon, France. The genome consists of a 3,866,286 bp circular chromosome and a megaplasmid of 715,144 bp.
View Article and Find Full Text PDF