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The exopolysaccharide (EPS) Pea is essential for wrinkly colony morphology, pellicle formation, and robust biofilm production in Pseudomonas putida. The second messenger cyclic diguanylate monophosphate (c-di-GMP) induces wrinkly colony morphology in P. putida through an unknown mechanism(s). Herein, we found that c-di-GMP modulates wrinkly colony morphology via the regulation of expression of (), a small individually transcribed gene of 177 bp, and this gene was adjacent to the upstream region of the cluster. Phenotype observation revealed that was essential for Pea-dependent phenotypes. The deletion of led to a smooth colony morphology and impaired biofilm, which was analogous to the phenotypes with loss of the entire operon. expression was positively regulated by c-di-GMP via the transcriptional effector FleQ, and was essential for the c-di-GMP-induced wrinkly colony morphology. Structure prediction results implied that EppA had two transmembrane regions, and Western blotting revealed that EppA was located on the cell membrane. Transcriptomic analysis indicated that EppA had no significant effect on the transcriptomic profile of P. putida. A bacterial two-hybrid (BTH) assay suggested that there was no direct interaction between EppA and the proteins in the cluster and adjacent operons. Overall, these findings reveal that EppA is essential for Pea-dependent phenotypes and that c-di-GMP modulates Pea-dependent phenotypes via regulation of expression in P. putida. Microbe-secreted EPSs are high-molecular-weight polysaccharides that have the potential to be used as industrially important biomaterials. The EPS Pea in P. putida is essential for wrinkly colony morphology and pellicle formation. Here, we identified a function-unknown protein, EppA, which was also essential for Pea-dependent wrinkly colony morphology and pellicle formation, and EppA was probably involved in Pea secretion. Meanwhile, our results indicated that the second messenger c-di-GMP positively regulated the expression of EppA, resulting in Pea-dependent wrinkly colony morphology. Our results reveal the relationship of c-di-GMP, EppA, and Pea-dependent phenotypes and provide a possible pathway to construct genetically engineered strains for high Pea production.
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http://dx.doi.org/10.1128/aem.02270-21 | DOI Listing |
Funct Integr Genomics
September 2025
Department of Otolaryngology-Head and Neck Surgery, Maternal and Child Health Hospital of Hubei Province, NO.745 Wuluo Road, Hongshan District, Wuhan, 430070, Hubei Province, China.
Background: Head and neck squamous cell carcinoma (HNSCC) stands as a significant global health concern, marked by its substantial impact on both morbidity and mortality rates. Although previous studies have suggested that circular RNAs (circRNAs) may influence HNSCC progression, the underlying mechanisms remain largely unclear.
Methods: In this study, we first used quantitative real-time polymerase chain reaction (qRT-PCR) to measure the expression levels of circSHPRH in HNSCC tissues and cell lines.
Drug Dev Res
September 2025
Endoscopy Center, Minhang Hospital, Fudan University, Shanghai, China.
Colorectal cancer (CRC) is a common malignancy often characterized by metastasis and poor prognosis. This study attempts to ascertain the anticancer impacts of theaflavin (TF) on CRC cells and examine the fundamental molecular mechanisms, focusing on the function of DDIT4 in CRC progression. This study utilized RNA sequencing for gene expression profiling, differential expression analysis, and Venn diagram analysis for overlapping genes.
View Article and Find Full Text PDFBiotechnol Lett
September 2025
Jiangsu Key Laboratory for Biodiversity and Biotechnology, School of Biological Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing, 210023, China.
As critical environmental factors, nitrogen and light not only regulate phytoplankton growth but also influence their phenotypic plasticity. Scenedesmus obliquus, an alga which is famous for its remarkable phenotypic plasticity, was studied to understand its response to varying combinations of nitrogen source and light intensity. It was cultured in media containing different nitrogen sources (NaNO, NHCl, CO(NH)) under a range of light intensities (25, 50, 75, 100, 150 µmol photons m s).
View Article and Find Full Text PDFIUBMB Life
September 2025
Department of Orthopaedics, Xiangya Hospital, Central South University, Changsha, Hunan, China.
Osteosarcoma (OS) is an uncommon malignancy with stagnant survival rates over the past four decades and early-stage metastasis, predominantly affecting children and adolescents. This study identified significant metabolic differences between metastatic and non-metastatic OS samples through bioinformatics analysis, highlighting key processes such as cell proliferation, mitochondrial assembly, and changes in mitochondrial membrane permeability. Among differentially expressed genes, Pleckstrin Homology And FYVE Domain Containing 1 (PLEKHF1) was the most significantly downregulated in metastatic OS samples.
View Article and Find Full Text PDFAvian Pathol
September 2025
North of England Zoological Society (Chester Zoo), Chester, UK.
Avian pseudotuberculosis infection usually presents as well-demarcated visceral necrotic foci, typically affecting the gastrointestinal tract, liver and spleen. This case series describes an atypical presentation of (Yptb) characterized by severe chronic myositis, arthritis and osteomyelitis in five village weavers (), and acute osteomyelitis and myositis associated with septicaemia in an oriental magpie robin () from a zoological collection. Clinical signs of the weavers included lethargy, poor flying ability and focally extensive periarticular and muscular swelling, whereas the magpie robin was found dead without premonitory signs.
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