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Phylogenetic analysis based on 16S rRNA gene sequences of the genus showed the presence of six distinguishable clusters, with 100 % sequence similarity values among strains in each cluster; thus they shared almost the same evolutionary distance. This result corroborated well with the outcome of core gene (orthologous gene clusters) based genome phylogeny analysis of 190 genomes including the species in those six clusters. These preeminent results led to an investigation of genome-based indices such as digital DNA-DNA hybridization (dDDH), average nucleotide identity (ANI) and average amino acid identity (AAI) for the strains in those six clusters. Certain strains recorded genomic indices well above the threshold values (70 %, 95-96 % and >95 % for dDDH, ANI and AAI, respectively) determined for species affiliation, suggesting only one type strain belongs to described species and the other(s) may need to be reduced in taxa to a later heterotypic synonym. To conclude, the results of comprehensive analyses based on phylogenetic and genomic indices suggest that the following six reclassifications are proposed: as a later heterotypic synonym of ; as a later heterotypic synonym of ; as a later heterotypic synonym of ; as a later heterotypic synonym of ; as a later heterotypic synonym of ; and as a later heterotypic synonym of .
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http://dx.doi.org/10.1099/ijsem.0.004217 | DOI Listing |
Int J Syst Evol Microbiol
September 2025
Key Laboratory of Ecological Remediation and Safe Utilization of Heavy Metal-Polluted Soils, School of Life and Health Sciences, Hunan University of Science and Technology, Xiangtan, 411201, Hunan, PR China.
In this study, the taxonomic relationship between and was reassessed utilizing a polyphasic taxonomic approach. Molecular identification through 16S rRNA gene sequence analysis demonstrated that DSM 5050 exhibited the highest sequence similarities with LMG 31458 (99.57%), LMG 31460 (99.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
September 2025
College of Synthetic Biology Industry, Hunan University of Arts and Science, Changde 415000, PR China.
16S rRNA gene sequence analysis indicated that F21 shared the highest sequence similarity of 100.00% to XAY3209. Phylogenetic analysis based on 16S rRNA gene and whole-genome sequences revealed that F21 formed a cluster with XAY3209, suggesting that there was a close genetic relationship between them.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
September 2025
School of Computer Science and Engineering, Hunan University of Science and Technology, Xiangtan 411201, PR China.
The taxonomic relationship between and was re-evaluated using comparative genome analysis. The 16S rRNA gene sequence analysis indicated that the type strains of and shared 100% sequence similarity. Phylogenetic trees based on 16S rRNA gene sequences indicated that JCM 4387 was clustered together with CGMCC 4.
View Article and Find Full Text PDFCurr Microbiol
August 2025
Laboratoire de Biologie Des Systèmes Microbiens (LBSM), Ecole Normale Supérieure Cheikh Mohamed El Bachir El Ibrahimi, Kouba, BP 92, Algiers, Algeria.
The present study reports comprehensive phylogenomic and comparative analyses between Dactylosporangium vinaceum NRRL B-16297 and Dactylosporangium matsuzakiense VKM Ac-1321 to clarify their taxonomic relationship. Genomic relatedness analyses between both type strains yielded an average nucleotide identity (ANI) of 97.6%, an average amino acid identity (AAI) of 99.
View Article and Find Full Text PDFCurr Microbiol
August 2025
Department of Biological Sciences and Biotechnology, Hannam University, Daejeon, 34054, Republic of Korea.
Three actinobacterial strains, designated as KSW-48, KSWW-56 and SSW1-59, were isolated from seawater, rock-attached living and dried seaweeds collected at Gwakji Beach in Jeju, Republic of Korea. All the isolates showed growth at 15-42 °C and pH 5-10, and tolerated NaCl for growth up to 10%. The 16S rRNA gene-based phylogeny showed that the novel strains were closely related with the type strains of Microbacterium aquimaris and Microbacterium luteum, with the 16S rRNA gene sequence similarity of 99.
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