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Coral reefs worldwide face an uncertain future with many reefs reported to transition from being dominated by corals to macroalgae. However, given the complexity and diversity of the ecosystem, research on how regimes vary spatially and temporally is needed. Reef regimes are most often characterised by their benthic components; however, complex dynamics are associated with losses and gains in both fish and benthic assemblages. To capture this complexity, we synthesised 3,345 surveys from Hawai'i to define reef regimes in terms of both fish and benthic assemblages. Model-based clustering revealed five distinct regimes that varied ecologically, and were spatially heterogeneous by island, depth and exposure. We identified a regime characteristic of a degraded state with low coral cover and fish biomass, one that had low coral but high fish biomass, as well as three other regimes that varied significantly in their ecology but were previously considered a single coral dominated regime. Analyses of time series data reflected complex system dynamics, with multiple transitions among regimes that were a function of both local and global stressors. Coupling fish and benthic communities into reef regimes to capture complex dynamics holds promise for monitoring reef change and guiding ecosystem-based management of coral reefs.
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http://dx.doi.org/10.1038/s41598-018-35057-4 | DOI Listing |
Eco Environ Health
September 2025
Institute of Environmental Processes and Pollution Control, and School of Environment and Ecology, Jiangnan University, Wuxi 214122, China.
Engineered nanoparticles (ENPs) accumulate in marine sediments and exhibit adverse effects on benthic organisms. However, the effect of ENPs on marine benthic food chains is largely unknown. Herein, we investigated the trophic transfer and transformation of CeO ENPs within a simulated marine benthic food chain from clamworm () to turbot (), as well as their effects on fish flesh quality.
View Article and Find Full Text PDFSTAR Protoc
September 2025
Faculty of Fisheries, Cukurova University, Adana, Türkiye. Electronic address:
Microplastic pollution threatens aquatic ecosystems and food webs. Here, we present a protocol for extracting microplastics from freshwater, sediment, and fish digestive system samples. We collect water using manta nets, sample sediment with benthic grabs, and dissect fish to isolate digestive organs.
View Article and Find Full Text PDFFish Shellfish Immunol
September 2025
MOE Key Laboratory of Molecular Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China; Key Laboratory of Tropical Aquatic Germplasm of Hainan Province, Sanya Oceanographic Institution, Ocean University of China, Sanya, 572025, China. Electronic add
Functioning as molecular chaperones, heat shock proteins (HSPs) are rapidly upregulated under stress conditions, safeguarding cells against damage induced by heat, mechanical injury, and chemical agents. Despite their critical physiological roles, a comprehensive genome-wide characterization of HSP genes has been lacking for Sebastes schlegelii, a commercially important coastal benthic fish. In this study, we systematically identified the HSP gene family and analyzed its expression profiles.
View Article and Find Full Text PDFPLoS One
September 2025
International Studies in Aquatic Tropical Ecology (ISATEC), University of Bremen, Bremen, Germany.
The Lower Meghna River (LMR), located in one of Bangladesh's most arsenic-contaminated regions, is essential for local fisheries and provides water for drinking, irrigation, and daily use. Consequently, this study investigates arsenic accumulation in ten edible, small indigenous species (SIS) of fish, considering their morphology, habitats, diets, and water and sediment conditions. Samples were analysed across three distinct river segments during three seasons.
View Article and Find Full Text PDFEarth's most complex and biodiverse ecosystems are characterised by high habitat complexity. On coral reefs, habitat complexity is influenced by the diverse morphology and composition of hard corals, shaping reef structure and shelter provision for many species. Various metrics are used to quantify reef complexity, yet, it remains unclear how well these metrics capture ecological functions such as shelter provision.
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