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The rapid development of genomics and proteomics requires accelerated improvement of the microarrays density, multiplexing, readout capabilities and cost-effectiveness. The bead arrays are increasingly attractive because of their self-assembly-based fabrication, which alleviates many problems of top-down microfabrication. Here we present a simple, reliable, robust and modular technique for the fabrication of bead microarrays, which combines the directed assembling of beads in microstructures and PDMS-based replica molding. The beads are first self-assembled in pyramidal microwells fabricated by anisotropic etching of silicon substrates, then transferred on the apex of PDMS pyramids that replicate the silicon microstructures. The arrays are chemically and biochemically robust; they are spatially addressable and have the potential for being informationally addressable; and they appear to offer better readout capabilities than the classical microarrays.
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http://dx.doi.org/10.1016/j.bios.2008.09.015 | DOI Listing |
Biol Proced Online
August 2025
Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Background: The HumanMethylationEPIC v2.0 BeadChip (EPIC v2.0) microarray is a widely used tool for genome-wide DNA methylation (DNAm) analysis, designed for high-quality human DNA with a recommended input of 250 ng.
View Article and Find Full Text PDFClin Chim Acta
July 2025
Centre for Research Impact & Outcome, Chitkara College of Pharmacy, Chitkara University, Rajpura, Punjab, India.
Pancreatitis is a predominant cause of gastrointestinal morbidity. However, the early and accurate detection of biomarkers, which is essential for guiding risk stratification and therapeutic decision-making, is constrained by the sensitivity and throughput limitations of conventional assays. This review critically examines advances in immunoassay technologies, including high-sensitivity lipase and amylase ELISAs, chemiluminescence and time-resolved fluorescence formats, label-free plasmonic sensors, digital single-molecule platforms, and multiplex bead-based and microarray systems, as applied to pancreatitis biomarker quantitation.
View Article and Find Full Text PDFMethods Mol Biol
July 2025
Grupo de Investigación de Reumatología, (INIBIC), A Coruña, Spain.
Multiplex antibody microarray assays based on suspension microsphere technology have emerged as a powerful tool in both basic and translational biomedical research, enabling the simultaneous quantification of multiple proteins within a single assay. Developing custom-designed multiplex assays offers the advantage of flexibility beyond predefined biomarker panels; nonetheless, addressing cross-reactivity remains a crucial step to ensure assay reliability and accuracy results. This chapter provides a comprehensive, step-by-step methodology for evaluating cross-reactivity in multiplex antibody microarrays, detailing techniques to validate and optimize assay performance.
View Article and Find Full Text PDFMethods Mol Biol
July 2025
Grupo de Investigación de Reumatología, (INIBIC), A Coruña, Spain.
The versatility of protein microarrays provides a variety of possibilities to explore proteomic profiles, allowing researchers to investigate multiple proteins simultaneously with high efficiency. In this study, we employed xMAP® technology to carry out a multiplex indirect semiquantitative immunoassay using the MILLIPLEXⓇ HCYTAAB-17K kit. This kit is designed with an integrated microarray containing 3 positive controls, 1 negative control, and 14 analytes.
View Article and Find Full Text PDFMethods Mol Biol
July 2025
Wageningen Bioveterinary Research, Lelystad, The Netherlands.
Bead-based suspension arrays built with multiple antigens enable detection and identification of specific antibodies in human and animal serum. Here we describe how to use synthetic peptides as antigens in a serological Luminex assay. Biotinylated peptides immobilized on avidin beads are used to capture serum antibodies, which in turn are detected using a generic immunoglobulin-binding protein or broad anti-bird antibodies in resp.
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