Publications by authors named "Shimin Hu"

Flow cytometric analysis plays an important role in the diagnosis of chronic lymphocytic leukemia/small lymphocytic lymphoma (CLL/SLL). Most CLL cases show a typical immunophenotype characterized by the expression of CD5, CD23, CD43, ROR1, and CD200, along with dim expression of B-cell markers. However, some show an atypical immunophenotype.

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Identification of cytogenetic abnormalities is critical for the classification and risk stratification of myelodysplastic syndromes (MDS). Optical genome mapping (OGM) is an emerging cytogenomic platform that enables high-resolution genome-wide cytogenetic analysis. We analyzed bone marrow specimens of 236 MDS patients, 149 newly diagnosed and 87 with relapsed/refractory disease, using OGM, conventional karyotyping and next-generation sequencing analysis.

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Context.—: Following the validation of a multicolor flow cytometry (MFC) assay for measurable residual disease (MRD) in acute myeloid leukemia (AML), this study examines its clinical applicability.

Objective.

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The t(11;14)(q13; q32)/IGH::CCND1 is a genetic hallmark of mantle cell lymphoma (MCL), reported to be present in about 95% of cases. In this study, we performed optical genome mapping (OGM) on 91 patients with MCL, in conjunction with next-generation sequencing (NGS), conventional chromosomal analysis and fluorescence in situ hybridization (FISH). The t(11;14)/IGH::CCND1 was detected in 82 cases, whereas 9 (10%) cases lacked this abnormality.

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Background And Objective: The primary objective of this study is to evaluate the added value of optical genome mapping (OGM) when integrated into the standard cytogenetic workup (SCGW) for hematological malignancies.

Methods: The study cohort comprised 519 cases with different types of hematological malignancies. OGM and SCGW (including G-banded karyotyping and fluorescence in situ hybridization) were performed on blood and/or bone marrow.

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Background: With BCR::ABL1 tyrosine kinase inhibitor (TKI) therapy, most patients with chronic-phase chronic myeloid leukemia (CML-CP) can achieve complete cytogenetic response (CCyR) within 6 months of therapy. However, no studies have investigated patients who do not achieve CCyR yet maintains stable disease on long-term TKI treatment. Here we investigated 30 CML-CP patients who did not achieve CCyR but remained free of blastic progression for at least 10-year while on TKI therapy.

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BCL11B is a pan-T-cell transcription factor that plays a pivotal role in guiding T-cell differentiation and maturation. BCL11B is lineage specific, and its expression is confined to T cells; B, NK ​and myeloid cells are usually negative. In this study, we aim to explore the value of BCL11B in the diagnosis and differential diagnosis of lymphomas/leukaemias exhibiting an ambiguous immunophenotype or which simultaneously express both T- and B-cell markers.

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Background: Inflammation plays a critical role in severe cerebral venous thrombosis (CVT) pathogenesis, but the benefits of anti-inflammatory therapies remain unclear. This study aimed to investigate the association between steroid therapy combined with anticoagulation and the prognosis of acute/subacute severe CVT patients.

Methods: A prospective cohort study enrolled patients with acute/subacute severe CVT at Xuanwu Hospital (July 2020-January 2024).

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Chromoanagenesis (CAG) encompasses a spectrum of catastrophic genomic events, including chromothripsis, chromoanasynthesis, and chromoplexy. We studied CAG in 410 patients with a diagnosis of acute myeloid leukemia (AML), 292 newly diagnosed (ND), and 118 refractory/relapsed, using optical genome mapping. CAG was identified by the presence of clusters (with 10 or more breakpoints) of structural abnormalities and/or segmental copy number alterations within one or more chromosomal regions.

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Background: Plasma biomarkers demonstrated potential in identifying amyloid pathology in early Alzheimer's disease. Different subtypes of subjective cognitive decline (SCD) may lead to different cognitive impairment conversion risks.

Objective: To investigate the differences of plasma biomarkers in SCD subtypes individuals, which were unclear.

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partial tandem duplication (PTD) involves intragenic duplications and has been associated with poorer prognosis. In this study, we evaluated PTD in 1277 patients with hematological malignancies using optical genome mapping (OGM). PTD was detected in 35 patients with acute myeloid leukemia (AML) (7%), 5 patients with myelodysplastic syndrome (MDS) (2.

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The synchronous presentation of chronic myeloid leukemia (CML) and multiple myeloma (MM) is extremely rare. CML is a myeloproliferative neoplasm originating from an abnormal pluripotent hematopoietic stem cell. It is associated with the - fusion gene located on the Philadelphia chromosome.

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fusion is mostly derived from a reciprocal translocation t(9;22)(q34.1;q11.2) and is rarely caused by insertion.

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Article Synopsis
  • The study investigates the effects of discontinuing ponatinib, a third-generation TKI, in patients with chronic myeloid leukemia in chronic phase (CML-CP), focusing on treatment-free remission outcomes.
  • Researchers reviewed data from 361 patients who attempted stopping TKIs and identified 11 who discontinued ponatinib specifically, with a median follow-up of 60.3 months.
  • Results showed that around 53% of patients maintained a state of no relapse (MRFS) for 60 months after stopping ponatinib, particularly those who had sustained MR4.5 for over 2 years before discontinuation.
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Article Synopsis
  • - The study introduces a new deep learning algorithm called feature fusion temporal convolutional network (FFTCN) designed to automate sleep staging using single-channel EEG data, addressing the time-consuming and subjective nature of traditional methods.
  • - FFTCN combines a 1D CNN for extracting temporal features and a 2D CNN for time-frequency features from spectrograms, which are then fused and classified using a temporal convolutional network (TCN).
  • - The proposed algorithm shows improved accuracy in classifying sleep stages among healthy subjects across multiple datasets, highlighting its potential to streamline professional sleep monitoring and reduce the workload on sleep technicians.
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Article Synopsis
  • Foundation models have achieved strong results in areas like natural language processing and computer vision, but they often require fine-tuning with specific knowledge for expert-level performance.
  • The paper introduces a new adapter called lusterAdapter that enhances the tuning process of the CLIP model, focusing on vision-language tasks using few annotated samples while preventing loss of prior knowledge.
  • Extensive experiments show that lusterAdapter significantly outperforms the original CLIP and other methods, achieving state-of-the-art performance across multiple classification benchmarks, with notable accuracy improvements.
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  • - Neural Radiance Fields (NeRFs) are great for creating detailed new images from different angles but need lots of accurate images and positions to work well.
  • - The SN eRF framework is designed to improve NeRF's effectiveness by working with fewer images and less precise positions by using multiple background knowledge sources.
  • - By matching key points and using a Ray Transformer with depth estimation, SN eRF can optimize NeRF's performance, resulting in high-quality image synthesis for indoor scenes.
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Article Synopsis
  • Cytogenomic characterization is essential for diagnosing and treating acute myeloid leukemia (AML), and this study evaluated the effectiveness of optical genome mapping (OGM) among 159 AML patients.
  • OGM demonstrated over 99% sensitivity in detecting clinically relevant cytogenetic abnormalities, and it revealed additional genetic alterations in nearly half of the patients studied, including new fusion genes and chromosomal rearrangements.
  • The findings suggest that OGM could significantly improve AML classification and risk assessment, influencing treatment decisions and trial eligibility, especially by identifying diagnostic information that traditional methods may miss.
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2D-3D joint learning is essential and effective for fundamental 3D vision tasks, such as 3D semantic segmentation, due to the complementary information these two visual modalities contain. Most current 3D scene semantic segmentation methods process 2D images "as they are", i.e.

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Article Synopsis
  • * The leukemic cells exhibited a range of doubling times and specific characteristics such as small to medium size, unique nuclear features, and varied cytoplasmic expressions.
  • * Despite some differences, TCL1 family-negative T-PLL shares many morphological and immunophenotypic traits with prototypic T-PLL, notably in their T-cell receptor positivity, which can help in diagnosing this rare condition.
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