Plant matter decomposition is a linchpin of global carbon cycling, yet the role of vertebrates remains poorly understood. Woodpeckers are ubiquitous vertebrate inhabitants of forests, where they hack into deadwood to forage for small animals. Our study in a temperate forest revealed not only how this behavior significantly impacts deadwood decomposition through mechanical breakdown but also how its species specificity leads to positive feedback on decomposition rates.
View Article and Find Full Text PDFResponding to Mori (2025), we discuss that the simplifications and implications of the Tea Bag Index are essential to its ease of use. However, they necessitate careful attention, especially regarding the appropriate incubation time. Aligning with Mori (2025), we call for a deeper understanding of the interpretation of k_TBI.
View Article and Find Full Text PDFThe majority of NW European peatlands are degraded due to conventional grassland-based livestock farming (i.e. lowered groundwater levels, high nutrient inputs and high mowing frequencies) leading to increased CO emissions and soil nutrient levels, and reduced biodiversity.
View Article and Find Full Text PDFSoil structure and aggregation are crucial for soil functionality, particularly under drought conditions. Saprobic soil fungi, known for their resilience in low moisture conditions, are recognized for their influence on soil aggregate dynamics. In this study, we explored the potential of fungal amendments to enhance soil aggregation and hydrological properties across different moisture regimes.
View Article and Find Full Text PDFThe breakdown of plant material fuels soil functioning and biodiversity. Currently, process understanding of global decomposition patterns and the drivers of such patterns are hampered by the lack of coherent large-scale datasets. We buried 36,000 individual litterbags (tea bags) worldwide and found an overall negative correlation between initial mass-loss rates and stabilization factors of plant-derived carbon, using the Tea Bag Index (TBI).
View Article and Find Full Text PDFDrained peatlands in temperate climates are under threat from climate change and human activities. The resulting decomposition of organic matter plays a major role in regulating the associated land subsidence rates, yet the determinants of aerobic and anaerobic peat decomposition rates are not fully understood. In this study, we sought to gain insight into the drivers of decomposition rates in botanically diverse peatlands (sedge, reed, wood, and moss dominant) under oxic and anoxic conditions.
View Article and Find Full Text PDFDeadwood is a large global carbon store with its store size partially determined by biotic decay. Microbial wood decay rates are known to respond to changing temperature and precipitation. Termites are also important decomposers in the tropics but are less well studied.
View Article and Find Full Text PDFEnviron Microbiol
August 2022
Dead wood quantity and quality is important for forest biodiversity, by determining wood-inhabiting fungal assemblages. We therefore evaluated how fungal communities were regulated by stem traits and compartments (i.e.
View Article and Find Full Text PDFThe reduction of plant diversity following eutrophication threatens many ecosystems worldwide. Yet, the mechanisms by which species are lost following nutrient enrichment are still not completely understood, nor are the details of when such mechanisms act during the growing season, which hampers understanding and the development of mitigation strategies.Using a common garden competition experiment, we found that early-season differences in growth rates among five perennial grass species measured in monoculture predicted short-term competitive dominance in pairwise combinations and that the proportion of variance explained was particularly greater under a fertilization treatment.
View Article and Find Full Text PDFFertilized agroecosystems may show considerable leaching of the mobile nitrogen (N) compound NO, which pollutes groundwater and causes eutrophication of downstream waterbodies. Riparian buffer zones, positioned between terrestrial and aquatic environments, effectively remove NO and serve as a hotspot for NO emissions. However, microbial processes governing NO reduction in riparian zones still remain largely unclear.
View Article and Find Full Text PDFClimate change will have large consequences for flooding frequencies in freshwater systems. In interaction with anthropogenic activities (flow regulation, channel restoration and catchment land-use) this will both increase flooding and drought across the world. Like in many other ecosystems facing changed environmental conditions, it remains difficult to predict the rate and trajectory of vegetation responses to changed conditions.
View Article and Find Full Text PDFAn increasing number of people lives in coastal zones with a subsurface consisting of heterogenic soft-soil sequences. Many of these sequences contain substantial amounts of peat. While population growth and urbanization continues in coastal zones, they are threatened by global sea-level rise and land subsidence.
View Article and Find Full Text PDFGlobal change, like droughts, can destabilize the carbon sink function of peatlands, either directly or indirectly through changes in plant community composition. While the effects of drought and plant community composition on individual carbon (C) related processes are well understood, their effect on multiple C-related processes simultaneously-multifunctionality-is poorly known. We studied the effect of drought on four C-related processes (net and gross CO exchange, methane fluxes, and dissolved organic carbon content) in a plant removal experiment.
View Article and Find Full Text PDFBacterial amoA genes had not been detectable by qPCR in freshly sampled Icelandic Andosols thus far. Hence, a new primer set yielding shorter gene fragments has been designed to verify the absence of ammonia-oxidizing bacteria in different Icelandic Andosol classes. At the same time, a new primer set was also constructed for archaeal amoA genes that should improve the quality of PCR products.
View Article and Find Full Text PDFDenitrification has long been regarded as the only pathway for terrestrial nitrogen (N) loss to the atmosphere. Here we demonstrate that large-scale anaerobic ammonium oxidation (anammox), an overlooked N loss process alternative to denitrification which bypasses nitrous oxide (N2O), is ubiquitous in inland waters of China and contributes significantly to N loss. Anammox rates in aquatic systems show different levels (1.
View Article and Find Full Text PDFFEMS Microbiol Ecol
March 2015
The first step of nitrification is carried out by ammonia-oxidizing bacteria (AOB) and archaea (AOA). It is largely unknown, by which mechanisms these microbes are capable of coexistence and how their respective contribution to ammonia oxidation may differ with varying soil characteristics. To determine how different levels of ammonium availability influence the extent of archaeal and bacterial contributions to ammonia oxidation, microcosm incubations with controlled ammonium levels were conducted.
View Article and Find Full Text PDFNutrient enrichment of mangroves, a common phenomenon along densely populated coastlines, may negatively affect mangrove ecosystems by modifying internal carbon and nutrient cycling. The decomposition of litter exerts a strong influence on these processes and is potentially modified by eutrophication. This study describes effects of N and P enrichment on litter decomposition rate and mineralisation/immobilisation patterns.
View Article and Find Full Text PDFAmmonium/ammonia is the sole energy substrate of ammonia oxidizers, and is also an essential nitrogen source for other microorganisms. Ammonia oxidizers therefore must compete with other soil microorganisms such as methane-oxidizing bacteria (MOB) in terrestrial ecosystems when ammonium concentrations are limiting. Here we report on the interactions between nitrifying communities dominated by ammonia-oxidizing archaea (AOA) and Nitrospira-like nitrite-oxidizing bacteria (NOB), and communities of MOB in controlled microcosm experiments with two levels of ammonium and methane availability.
View Article and Find Full Text PDFPeat soils comprise a large part of the western and northern Netherlands. Drainage for agriculture has caused increased soil aeration which has stimulated decomposition and, hence, soil subsidence, currently amounting to 1-2 cm/yr. River water is supplied to these peat areas in summer to prevent drying out of the peat soils.
View Article and Find Full Text PDFExtreme summer droughts are expected to occur more often in the future in NW Europe due to climate change. These droughts might accelerate the rate of peat oxidation in drained peat areas, with impacts on soil subsidence, GHG emission and water quality. This study aimed at providing more insight in the oxidation of deep peat layers that had not previously been exposed to air, the so-called secondary decomposition.
View Article and Find Full Text PDFMicrobes catalyze all major geochemical cycles on earth. However, the role of microbial traits and community composition in biogeochemical cycles is still poorly understood mainly due to the inability to assess the community members that are actually performing biogeochemical conversions in complex environmental samples. Here we applied a polyphasic approach to assess the role of microbial community composition in modulating methane emission from a riparian floodplain.
View Article and Find Full Text PDFFEMS Microbiol Ecol
October 2013
Microbial communities display a variety of biogeographical patterns mainly driven by large-scale environmental gradients. Here, we analysed the spatial distribution of methane-oxidizing bacteria (MOB) and methane oxidation in a strongly fluctuating environment. We investigated whether the spatial variability of the MOB community can be explained by an environmental gradient and whether this changes with different plot sizes.
View Article and Find Full Text PDFThe contribution of ammonia-oxidizing bacteria and archaea (AOB and AOA, respectively) to the net oxidation of ammonia varies greatly between terrestrial environments. To better understand, predict and possibly manage terrestrial nitrogen turnover, we need to develop a conceptual understanding of ammonia oxidation as a function of environmental conditions including the ecophysiology of associated organisms. We examined the discrete and combined effects of mineral nitrogen deposition and geothermal heating on ammonia-oxidizing communities by sampling soils from a long-term fertilization site along a temperature gradient in Icelandic grasslands.
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