Publications by authors named "Da-yong Zhang"

Anthocyanin accumulation in leaves or flowers mitigates photooxidation damage from reactive oxygen species (ROS) and functions in plant/animal interactions. Among the most conspicuously anthocyanin-accumulating tissues are stigmas, especially in wind-pollinated trees. In the walnut genus (Juglans), yellow stigmas are ancestral, but a few species have dark red stigmas.

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  • An interested reader pointed out that the flow cytometric plots for 'Dasatinib' and 'CA-4' in the original article were duplicates due to a data assembly error.
  • The authors also found they had mistakenly switched the written ratios for mitochondrial membrane-depolarized HO-8910 cells, with the correct percentages being 22.50% for Dasatinib and 15.71% for CA-4.
  • A corrigendum has been published, and the authors apologize for the oversight, confirming that it did not significantly impact the study's results or conclusions.
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  • Ghost introgression involves the transfer of genetic material from extinct lineages into currently existing species, with limited evidence found in plants, particularly for Carya sinensis and Carya cathayensis.
  • Researchers assembled chromosome-level genomes for these species and re-sequenced 43 C. sinensis individuals and 11 diploid hickory species to explore genetic patterns and confirm ghost introgression.
  • Their analysis, employing methods like D-statistic and BPP alongside phylogenetic network analysis, provided strong evidence of ghost introgression in C. sinensis from an extinct lineage, enhancing the understanding of Carya's evolutionary history and biogeography.
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  • Recent research on hybridization highlights the concept of ghost introgression, where genetic material is transferred from extinct or unsampled species to living ones.
  • The study assesses various phylogenetic methods, particularly comparing heuristic approaches and the full-likelihood method BPP, in detecting ghost introgression in a controlled scenario with known species relationships.
  • Results indicate that while common methods struggle to accurately identify ghost introgression, the full-likelihood BPP method effectively analyzes complex datasets, as demonstrated by its application to a dataset of Jaltomata species.
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  • Autopolyploidy serves as an effective model for studying how whole-genome duplication affects genomic changes; this research focuses on Cyclocarya paliurus, a species with both diploid and autotetraploid forms.
  • The study revealed that the autotetraploid genome has 64 chromosomes with clusters showing similarity in length and gene expression, alongside significant genetic structural variations.
  • It was found that many genes displayed allelic loss, particularly near structural variations and transposable elements, though genes with multiple copies had higher expression linked to stress response, indicating evolutionary advantages for autotetraploids.
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  • - The study explores the essential relationship between nuclear and chloroplast genomes in plants, focusing on how they coevolve to maintain cellular functions despite mutations and selection pressures.
  • - Researchers analyzed 4,894 nuclear genes and 76 chloroplast genes among nine Juglandaceae species, finding that 1,369 (27.97%) of the nuclear genes showed evidence of coevolution, especially within the Ycf1/2 chloroplast partition.
  • - The research indicates significant biological enrichment in processes like leaf development and stress response among these coevolving nuclear genes, with varying evolutionary rates observed across different chloroplast gene partitions.
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  • This text discusses how different species can evolve similar traits (convergent evolution) when faced with similar environmental challenges, while closely related species can diverge when adapting to extreme habitats.
  • The research focuses on two species of the Platycarya genus—Platycarya longipes and Platycarya strobilacea—by analyzing their genomes to understand the molecular processes involved in their evolutionary paths.
  • The findings suggest that P. longipes has undergone significant genetic differentiation influenced by long-term selection, particularly in the calcium influx channel gene TPC1, which may highlight a shared adaptation to high calcium environments in karst regions.
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Ecological interactions among plants, insect herbivores, and parasitoids are pervasive in nature and play important roles in community assembling, but the codiversification of tri-trophic interactions has received less attention. Here we compare pairwise codiversification patterns between a set of 22 fig species, their herbivorous pollinating and galling wasps, and their parasitoids. The parasitoid phylogeny showed significant congruence and more cospeciation events with host insects phylogeny than with host plants.

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  • The study investigates the genetic relationships within the walnut family (Juglandaceae) using data from seven chromosome-level genomes, including two newly assembled genomes.
  • Through analyses of microsynteny and gene content, the research confirms previous findings that associate Platycarya with Engelhardia, contrasting with DNA alignment methods that link Platycarya to Carya and Juglans due to past hybridization.
  • The research also suggests that Juglandaceae likely originated from hybridization events involving now-extinct or unsampled progenitors closely related to Myricaceae, with Rhoiptelea chiliantha exhibiting a unique slower evolutionary rate and a higher proportion of DNA repair genes compared to other species in the family.
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Purpose/significance: Studying the correlation between short video users' personality traits and their sharing motivation can enrich the theoretical research on social sharing motivation and provide a reference for short-video content management and platform construction.

Methods/process: Based on uses and gratifications theory and personality traits theory, a structural model affecting short-video users' sharing motivations was proposed. A total of 579 valid questionnaires were collected from a social network, and the proposed hypotheses were tested using SPSS and Amos software.

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Polyploidy is ubiquitous and its consequences are complex and variable. A change of ploidy level generally influences genetic diversity and results in morphological, physiological and ecological differences between cells or organisms with different ploidy levels. To avoid cumbersome experiments and take advantage of the less biased information provided by the vast amounts of genome sequencing data, computational tools for ploidy estimation are urgently needed.

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The species studied in any evolutionary investigation generally constitute a small proportion of all the species currently existing or that have gone extinct. It is therefore likely that introgression, which is widespread across the tree of life, involves "ghosts," that is, unsampled, unknown, or extinct lineages. However, the impact of ghost introgression on estimations of species trees has rarely been studied and is poorly understood.

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  • The study investigates the demographic histories and hybridization between Persian walnut (Juglans regia) and iron walnut (Juglans sigillata) using genomic data and population-genetic models.
  • Results suggest that these species diverged around 850,000 years ago, with gene flow from J. regia into J. sigillata, especially concerning traits like shell thickness.
  • Both species faced significant population declines during domestication, highlighting a bottleneck effect, and introgression from J. regia likely influenced the domestication process of J. sigillata.
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Premise: Fecundity and mating outcomes commonly differ among plant populations occupying contrasting environments. If self-pollination occurs primarily among flowers within plants, contrasting reproductive outcomes among populations must reflect environmental effects on plant-pollinator interactions. Specifically, local conditions could affect features of plant phenotypes that influence pollinator behavior, in turn modifying plant reproductive outcomes.

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Although hybridization plays a large role in speciation, some unknown fraction of hybrid individuals never reproduces, instead remaining as genetic dead-ends. We investigated a morphologically distinct and culturally important Chinese walnut, Juglans hopeiensis, suspected to have arisen from hybridization of Persian walnut (J. regia) with Asian butternuts (J.

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Topological cytonuclear discordance is commonly observed in plant phylogenetic and phylogeographic studies, yet few studies have attempted to detect two other forms of cytonuclear discordance (branch length and geographical) and to uncover the causes of the discordance. We used the whole nuclear and chloroplast genome data from 80 individual Asian butternuts to reveal the pattern and processes of cytonuclear discordance. Our findings indicate that the chloroplast genome had substantially deeper divergence (branch-length discordance) and a steeper cline in the contact zone (geographic discordance) compared with the nuclear genome.

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  • TcpC is a part of uropathogenic E. coli (UPEC) that helps it be harmful by stopping a defense system in our body called NETosis, which is made by neutrophils to fight infections! * -
  • In experiments with mice and human cells, TcpC was shown to stop neutrophils from working properly by reducing important signals that help fight infections! * -
  • The study found that TcpC acts like a special helper that causes a protein called PAD4 to be broken down, which prevents the neutrophils from attacking the bacteria effectively! *
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Cancer stem cells (CSCs) are a small population of heterogeneous tumor cells with the capacity of self-renewal and aberrant differentiation for immortality and divergent lineages of cancer cells. In contrast to bulky tumor cells, CSCs remain less differentiated and resistant to therapy even when targeted with tissue-specific antigenic markers. This makes CSCs responsible for not only tumor initiation, development, but also tumor recurrence.

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Background: Accurate inference of demographic histories for temperate tree species can aid our understanding of current climate change as a driver of evolution. Microsatellites are more suitable for inferring recent historical events due to their high mutation rates. However, most programs analyzing microsatellite data assume a strict stepwise mutation model (SMM), which could cause false detection of population shrinkage when microsatellite mutation does not follow SMM.

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Contact resistance () is of great importance for radio frequency (RF) applications of graphene, especially graphene field effect transistors (FETs) with short channel. FETs and transmission line model test structures based on chemical vapor deposition grown graphene are fabricated. The effects of employing traditional lithography solvent (Acetone) and strong solvents for photo resist, such as N, N-Dimethylacetamide (ZDMAC) and N-Methyl pyrrolidone (NMP), are systematically investigated.

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  • TcpC is a protein made by a type of bacteria that can cause urinary tract infections and helps the bacteria escape the body's defenses.
  • It works by attaching to a protein called MyD88, which is important for the immune system to work properly, and causing it to break down.
  • The study shows that specific parts of TcpC are needed for it to destroy MyD88, which helps the bacteria avoid being fought off by the immune system.
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Diterpenoids jolkinolide A and B, were first isolated from Euphorbia fischeriana. In our previous research, 19-(Benzyloxy)-19-oxojolkinolide B (19-BJB), a derivative of jolkinolides, was synthesized as a novel ent -abietane diterpene diepoxide. In this study, 19-BJB showed strong in vitro activity against bladder cancer cell lines.

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Recently, graphene has led to unprecedented progress in device performance at the atom limit. A high performance of field-effect transistors requires a low graphene-metal contact resistance. However, the chemical doping methods used to tailor or improve the properties of graphene are sensitive to ambient conditions.

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