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Polyadenylation of mRNA is a key step in post-transcriptional regulation. In this issue of , Gabs and colleagues (doi:10.1101/gad.352912.125) provide evidence for a novel, kinetically driven mechanism that dictates the length of poly(A) tails added to mRNAs in budding yeast. The investigators introduce the concept of Nab2, a zinc finger poly(A) RNA binding protein, as a "kinetic ruler," which functions through dynamic competition with the cleavage and polyadenylation complex (CPAC) to define the length of poly(A) tails.
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http://dx.doi.org/10.1101/gad.353241.125 | DOI Listing |
Gigascience
January 2025
Department of Microbiology and Immunology, University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, 3000, Australia.
Polyadenylation is a dynamic process that is important in cellular physiology, which has implications in messenger RNA decay rates, translation efficiency, and isoform-specific regulation. Oxford Nanopore Technologies direct RNA sequencing provides a strategy for sequencing the full-length RNA molecule and analysis of the transcriptome. Several tools are currently available for poly(A) tail length estimation, including well-established methods like tailfindr and nanopolish, as well as more recent deep learning models like Dorado.
View Article and Find Full Text PDFAnal Methods
September 2025
School of Materials Science and Engineering, Xiangtan University, Xiangtan 411105, PR China.
Cervical cancer is the fourth most common cancer among women worldwide. Human papillomavirus type 16 (HPV16) is one of the common biomarkers which cause cervical cancer. In this work, an electrochemical sensor based on a triblock polyadenine-based probe (TPP) and copper nanoclusters (CuNCs) was constructed for the rapid, sensitive and selective detection of HPV16.
View Article and Find Full Text PDFNat Commun
August 2025
Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA.
Genome-wide spatial long-read approaches often lack single-cell resolution and yield limited read lengths. Here, we introduce spatial ISOform sequencing (Spl-ISO-Seq), which reveals exons and polyadenylation sites with near-single-cell resolution. Spl-ISO-Seq selects long cDNAs and doubles to triples read lengths compared to standard preparations.
View Article and Find Full Text PDFCell
August 2025
State Key Laboratory of Genome and Multi-omics Technologies, BGI Research, Shenzhen 518083, China; Guangdong Provincial Key Laboratory of Genome Read and Write, BGI Research, Shenzhen 518083, China; Shanxi Medical University-BGI Collaborative Center for Future Medicine, Shanxi Medical University, Ta
Performing total RNA profiling on formalin-fixed, paraffin-embedded (FFPE) samples, the predominant sample conservation method in clinical practice, remains challenging for current spatial transcriptomics techniques. Here, we introduce Stereo-seq V2, which employs random primers to capture and sequence RNAs in situ on FFPE sections and provides single-cell resolution. The random-priming-based strategy offers unbiased transcript capturing and uniform gene body coverage, which increase the sensitivity to marker genes, the efficiency of non-polyadenylation (poly(A)) RNA profiling, and immune repertoire coverage.
View Article and Find Full Text PDFGenes Dev
August 2025
Department of Biology, Emory College of Arts and Sciences, Atlanta, Georgia 30322, USA
Polyadenylation of mRNA is a key step in post-transcriptional regulation. In this issue of , Gabs and colleagues (doi:10.1101/gad.
View Article and Find Full Text PDF