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In digital pathology, nuclei segmentation is a critical task for pathological image analysis, holding significant importance for diagnosis and research. However, challenges such as blurred boundaries between nuclei and background regions, domain shifts between pathological images, and uneven distribution of nuclei pose significant obstacles to segmentation tasks. To address these issues, we propose an innovative Causal inference inspired Diversified aggregation convolution Network named CDNet, which integrates a Diversified Aggregation Convolution (DAC), a Causal Inference Module (CIM) based on causal discovery principles, and a comprehensive loss function. DAC improves the issue of unclear boundaries between nuclei and background regions, and CIM enhances the model's cross-domain generalization ability. A novel Stable-Weighted Combined loss function was designed that combined the chunk-computed Dice Loss with the Focal Loss and the Causal Inference Loss to address the issue of uneven nuclei distribution. Experimental evaluations on the MoNuSeg, GLySAC, and MoNuSAC datasets demonstrate that CDNet significantly outperforms other models and exhibits strong generalization capabilities. Specifically, CDNet outperforms the second-best model by 0.79% (mIoU) and 1.32% (DSC) on the MoNuSeg dataset, by 2.65% (mIoU) and 2.13% (DSC) on the GLySAC dataset, and by 1.54% (mIoU) and 1.10% (DSC) on the MoNuSAC dataset. Code is publicly available at https://github.com/7FFDW/CDNet.
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http://dx.doi.org/10.1016/j.artmed.2025.103239 | DOI Listing |
Psychol Sci
September 2025
School of Educational Psychology and Counselling, Faculty of Education, Monash University.
This study examined the sequence and timing of sexual identity development (SID) milestones among Generation Z LGBTQ+ Australians, focusing on variations across subgroups and their relationship with minority stressors. The study included 490 Australian LGBTQ+ individuals aged 16 to 26, predominantly White ( = 389) and assigned female at birth ( = 402), with a balanced distribution between cisgender and gender-diverse participants. Demographic differences in the timing and achievement of SID milestones were found for sexual and gender identity.
View Article and Find Full Text PDFBioinformatics
September 2025
Department of Biostatistics, University of Pittsburgh, Pittsburgh, Pennsylvania United States.
Summary: Causal mediation analysis investigates the role of mediators in the relationship between exposure and outcome. In the analysis of omics or imaging data, mediators are often high-dimensional, presenting challenges such as multicollinearity and interpretability. Existing methods either compromise interpretability or fail to effectively prioritize mediators.
View Article and Find Full Text PDFCereb Cortex
August 2025
Aix-Marseille Université, Institut National de la Santé et de la Recherche Médicale, Institut de Neurosciences des Systèmes (INS) UMR1106, Marseille 13005, France.
Over three decades, statistical parametric mapping has transformed neuroimaging from descriptive mapping to causal inference, placing generative models at the core of causal explanations for brain function. It inspired to a large degree The Virtual Brain, which builds subject-specific digital twins from multimodal data, enabling brain simulations and exploration. Both frameworks converge at parameter estimation, where model and data meet, providing the mathematical manifestation of cause-effect in pathophysiology.
View Article and Find Full Text PDFGenetica
September 2025
Faculty of Fisheries and Aquaculture Sciences, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia.
Population genetics plays a critical role in creating policies for managing fisheries, conservation, and development of aquaculture. The golden snapper, Lutjanus johnii (Bloch, 1792), is a highly commercial and aquaculture important snapper species. This study used mitochondrial markers D-loop (151 specimens) and Cytochrome b (Cyt-b, 120 specimens) from 10 populations, including populations from the east South China Sea, the west South China Sea and the Strait of Malacca to investigate the genetic diversity, population connectivity, and historical demography of L.
View Article and Find Full Text PDFPlanta
September 2025
Department of Biology, University of Naples Federico II, Via Cinthia 26, 80126, Naples, Italy.
The first complete plastid genome of the critically endangered species Valeriana trinervis was sequenced, assembled and compared with other published Valeriana plastomes. In this study, we assembled the plastid genome of the critically endangered, endemic species Valeriana trinervis (= Centranthus trinervis) and compare it with all published plastomes of Valeriana. We found not only differences in the inverted repeats boundaries, in the type and abundance of repeats, but also similarities in codon usage and microsatellite numbers.
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