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Coral reefs are one of the most biodiverse ecosystems on Earth and are extremely important for marine ecosystems. However, coral reefs are rapidly degrading globally, and for this reason, in-situ online monitoring systems are being used to monitor coral reef ecosystems in real time. At the same time, artificial intelligence technology, particularly deep learning technology, is playing an increasingly important role in the study of coral reef ecology, especially in the automatic detection and identification of coral reef fish. However, deep learning is essentially a data-driven technique that relies on high-quality datasets for training, while existing fish identification datasets suffer from low resolution and inaccurate labeling, which limits the application of deep learning techniques to coral reef fish identification. To better utilize deep learning techniques for real-time automatic detection and identification of coral reef fish from the data collected by the in-situ online monitoring system, this paper proposes a high-resolution, fish species-rich, and well-labeled coral reef fish dataset SCSFish2025, which is the first publicly available coral reef fish dataset in the waters of China's Nansha Islands. SCSFish2025 contains 11,956 high-resolution underwater surveillance images and over 120,000 bounding boxes covering 30 species of fish that have been manually labelled by experienced fish identification experts, with sub-category labels for blurring, occlusion, and altered pose. Furthermore, this paper establishes a benchmark for the dataset by analyzing the detection performance of deep learning object detection techniques on this dataset using four state-of-the-art or typical object detection models as baseline models. The best baseline model RT-DETRv2 achieves mAP@50 performance of 0.9960 and 0.7486 respectively on the five-fold cross-validation of the training set and the independent test set. The release of this dataset will help promote the development of AI technology in the study of automatic detection and identification of coral reef fish, and provide strong support for the study of marine biodiversity and ecosystems. The project code and dataset are available at https://github.com/FudanZhengSYSU/SCSFish2025 .
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http://dx.doi.org/10.1038/s41598-025-14785-4 | DOI Listing |
Mar Pollut Bull
September 2025
Marine Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia.
Boat noise has been shown to distract and cause harm to many marine organisms. Most of the study effort has focused on fish & marine mammals, even though invertebrates represent over 92 % of all marine life. The few studies conducted on invertebrates have demonstrated clear negative effects of anthropogenic noise pollution.
View Article and Find Full Text PDFCytogenet Genome Res
September 2025
Background: The damselfishes, an extremely diverse group of herbivorous fish, stands out as an important and ubiquitous ecological component of coral reefs. In the Western South Atlantic, the genus Stegastes is the most representative, whose evolutionary paths and taxonomic status of insular endemic species have been better evaluated. To clarify the karyotypic evolution involved in the diversification of this group, cytogenetic analyses were performed in four nominal species (S.
View Article and Find Full Text PDFAbove-ground biomass contributes a large proportion of mangrove carbon stock; however, spatio-temporal dynamics of biomass are poorly understood in carbonate settings of the Southern Hemisphere. This influences the capacity to accurately project the effects of accelerating sea-level rise on this important carbon store. Here, above-ground biomass and productivity dynamics were quantified across mangrove age zones dominated by , spanning a tidal gradient atop a reef platform at Low Isles, Great Barrier Reef, Australia.
View Article and Find Full Text PDFZoolog Sci
August 2025
Department of Biology, Graduate School of Science, Osaka Metropolitan University, Sumiyoshi-ku, Osaka 558-8585, Japan,
Many cnidarian animals possess multiple opsins, including a type known as cnidopsin, which is found throughout the phylum Cnidaria and is divided into several subgroups. Previous studies have suggested that cnidopsins from jellyfish and coral can light-dependently elevate intracellular cAMP levels, likely via activation of Gs-type G protein in cultured cells. However, their spectroscopic properties remain largely unclear, with the exception of jellyfish opsins.
View Article and Find Full Text PDFZoolog Sci
August 2025
Marine Eco-Evo-Devo Unit, Okinawa Institute of Science and Technology Graduate University, Onna-son, Okinawa 904-0495, Japan,
Anemonefish have a characteristic vertical white barred color pattern on an orange background made by a specific distribution of three types of pigment cells: melanophores, xanthophores, and iridophores. This color pattern is an interesting alternative model to zebrafish to understand the cellular and molecular basis of complex color pattern formation. Using transmission electron microscopic observations, we have investigated the pigment cell composition in the skin of the anemonefish and found that: 1) white skin comprises iridophores and isolated melanophores; 2) orange skin contains xanthophores and scattered melanophores; and 3) black skin encompasses melanophores only.
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