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Predicting the prognosis of bladder cancer remains challenging despite standard treatments. We developed an interpretable bladder cancer deep learning (BCDL) model using preoperative CT scans to predict overall survival. The model was trained on a cohort (n = 765) and validated in three independent cohorts (n = 438; n = 181; n = 72). The BCDL model outperformed other models in survival risk prediction, with the SHapley Additive exPlanation method identifying pixel-level features contributing to predictions. Patients were stratified into high- and low-risk groups using deep learning score cutoff. Adjuvant therapy significantly improved overall survival in high-risk patients (p = 0.028) and women in the low-risk group (p = 0.046). RNA sequencing analysis revealed differential gene expression and pathway enrichment between risk groups, with high-risk patients exhibiting an immunosuppressive microenvironment and altered microbial composition. Our BCDL model accurately predicts survival risk and supports personalized treatment strategies for improved clinical decision-making.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC12357895 | PMC |
http://dx.doi.org/10.1038/s41698-025-01083-5 | DOI Listing |
Driven by eutrophication and global warming, the occurrence and frequency of harmful cyanobacteria blooms (CyanoHABs) are increasing worldwide, posing a serious threat to human health and biodiversity. Early warning enables precautional control measures of CyanoHABs within water bodies and in water works, and it becomes operational with high frequency in situ data (HFISD) of water quality and forecasting models by machine learning (ML). However, the acceptance of early warning systems by end-users relies significantly on the interpretability and generalizability of underlying models, and their operability.
View Article and Find Full Text PDFPLoS One
September 2025
Department of Computer Science, COMSATS University Islamabad, Sahiwal, Pakistan.
The widespread dissemination of fake news presents a critical challenge to the integrity of digital information and erodes public trust. This urgent problem necessitates the development of sophisticated and reliable automated detection mechanisms. This study addresses this gap by proposing a robust fake news detection framework centred on a transformer-based architecture.
View Article and Find Full Text PDFPLoS One
September 2025
College of Business Administration, Northern Border University (NBU), Arar, Kingdom of Saudi Arabia.
The increasing dependence on cloud computing as a cornerstone of modern technological infrastructures has introduced significant challenges in resource management. Traditional load-balancing techniques often prove inadequate in addressing cloud environments' dynamic and complex nature, resulting in suboptimal resource utilization and heightened operational costs. This paper presents a novel smart load-balancing strategy incorporating advanced techniques to mitigate these limitations.
View Article and Find Full Text PDFBioinformatics
September 2025
Novo Nordisk Foundation Center for Protein Research, Department of Cellular and Molecular Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 2200, Denmark.
Motivation: Representation learning has revolutionized sequence-based prediction of protein function and subcellular localization. Protein networks are an important source of information complementary to sequences, but the use of protein networks has proven to be challenging in the context of machine learning, especially in a cross-species setting.
Results: We leveraged the STRING database of protein networks and orthology relations for 1,322 eukaryotes to generate network-based cross-species protein embeddings.
IEEE Trans Biomed Eng
September 2025
Objective: Diffusion magnetic resonance imaging (dMRI) often suffers from low spatial and angular resolution due to inherent limitations in imaging hardware and system noise, adversely affecting the accurate estimation of microstructural parameters with fine anatomical details. Deep learning-based super-resolution techniques have shown promise in enhancing dMRI resolution without increasing acquisition time. However, most existing methods are confined to either spatial or angular super-resolution, disrupting the information exchange between the two domains and limiting their effectiveness in capturing detailed microstructural features.
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