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5-Enolpyruvylshikimate-3-phosphate synthase (EPSPS) is the primary target of the broad-spectrum herbicide glyphosate, and several well-characterized amino acid substitutions in EPSPS are known to confer glyphosate resistance. Here, we introduced the P106S substitution into wheat via prime editing, resulting in resistance to the field-recommended dosage of glyphosate. Either homozygous or heterozygous P106S in a single homeolog was sufficient to confer resistance, with tolerance levels of 461 g a.e. ha at 4 °C and 1383-1845 g a.e. ha at 28 °C. The P106S substitution reduced shikimate accumulation by 60-77% under glyphosate treatment, did not alter the native expression patterns of , and incurred negligible fitness costs under nonglyphosate conditions. Although P106S-edited lines exhibited growth inhibition and an approximate 10-day growth delay following glyphosate application, no significant yield penalty was observed at maturity. These glyphosate-resistant P106S alleles hold promising potential for integration into breeding programs to enhance weed control strategies.
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http://dx.doi.org/10.1021/acs.jafc.5c05769 | DOI Listing |
Nat Genet
September 2025
Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA.
Gene expression is modulated jointly by transcriptional regulation and messenger RNA stability, yet the latter is often overlooked in studies on genetic variants. Here, leveraging metabolic labeling data (Bru/BruChase-seq) and a new computational pipeline, RNAtracker, we categorize genes as allele-specific RNA stability (asRS) or allele-specific RNA transcription events. We identify more than 5,000 asRS variants among 665 genes across a panel of 11 human cell lines.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
September 2025
State Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 311400, China.
As global climate change exacerbates extreme heat events, the interplay between heat stress and blast disease resistance in rice remains poorly understood. In this study, through integrated transcriptome profiling and systematic phenotyping of mutants in several thermosensory pathways, we identified HsfA1 as a positive regulator of heat priming-enhanced blast resistance in rice. Systematic analysis of microRNA (miRNA) dynamics, bioinformatics prediction, and RNA pull-down experiments revealed that , a temperature-responsive miRNA, directly suppresses the expression of by targeting the second exon of messenger RNA (mRNA).
View Article and Find Full Text PDFPLoS One
September 2025
University of Montpellier, CNRS, IRD, Academic Hospital (CHU) of Montpellier, MiVEGEC, Montpellier, France.
Parasites of the Leishmania donovani complex are responsible for visceral leishmaniasis, a vector-borne disease transmitted through the bite of female phlebotomine sand flies. As well as the human hosts, these parasites infect many mammals which can serve as reservoirs. Dogs are particularly important reservoirs.
View Article and Find Full Text PDFEmbryonic development follows a conserved sequence of events across species, yet the pace of development is highly variable and particularly slow in humans. Species-specific developmental timing is largely recapitulated in stem cell models, suggesting a cell-intrinsic clock. Here we use directed differentiation of human embryonic stem cells into neuroectoderm to perform a whole-genome CRISPR-Cas9 knockout screen and show that the epigenetic factors Menin and SUZ12 modulate the speed of PAX6 expression during neural differentiation.
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