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The genetic characteristics of six wild populations of Ormosia microphylla were investigated and their soil properties were analyzed by using Hyper-seq sequencing technology. Based on the findings, targeted protection strategies are proposed. Genetic diversity analysis revealed moderate overall genetic diversity of O. microphylla populations, with the ZD showing the highest and the JX the lowest genetic diversity. Compared to the populations outside the tiankeng, the LY, located in a Karst tiankeng, exhibited lower genetic diversity. This reduced genetic diversity of LY was possibly influenced by the combined influence of selective pressures unique to the tiankeng environment as well as the founder effect. Genetic structure analysis further indicated that the optimal number of clusters for the six populations was K = 7. The LY exhibited a relatively pure genetic constitution, whereas the other populations exhibited more complex genetic structures. Phylogenetic analysis and assessments of genetic differentiation coefficients further demonstrated significant genetic distance of the LY from the other populations, with a high degree of differentiation. Overall, there was a significant level of genetic differentiation among the six populations. Soil analysis revealed that total organic content and Fe were significantly higher compared to other elements across the six populations. In addition, compared to other populations, the LY exhibited notable variations in soil characteristics, such as higher levels of Fe, K, TK, and Ca. Additionally, the pH of the soil harboring LY was neutral, whereas that of other populations was acidic. IBD analysis, after removing the LY, revealed that the outcomes changed from non-significant to significant, highlighting the critical role of the isolation effect of Karst tiankeng and geographical barriers in promoting genetic differentiation among populations. IBE analysis further indicated a significant impact of K and TK content in the soil on genetic differentiation between populations.
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http://dx.doi.org/10.1038/s41598-025-09432-x | DOI Listing |
Mol Biol Evol
September 2025
Department of Evolution and Ecology, University of California, Davis, CA, USA.
Drosophila seminal fluid proteins (SFPs) are often cited as an example of interlocus sexual conflict, wherein the proteins increase male fitness while decreasing female fitness, spurring recurring female counter adaptations and rapid molecular evolution. This model predicts that male-expressed genetic variation in the accessory gland, which produces seminal fluid, should generate counter-evolving genetic pathways in females, resulting in sexual coevolution. Using a trio of D.
View Article and Find Full Text PDFG3 (Bethesda)
September 2025
Department of Biology, Stanford University, Stanford, CA 94305, USA.
The ψ directionality index was introduced by Peter & Slatkin (Evolution 67: 3274-3289, 2013) to infer the direction of range expansions from single-nucleotide polymorphism variation. Computed from the joint site frequency spectrum for two populations, ψ uses shared genetic variants to measure the difference in the amount of genetic drift experienced by the populations, associating excess drift with greater distance from the origin of the range expansion. Although ψ has been successfully applied in natural populations, its statistical properties have not been well understood.
View Article and Find Full Text PDFBiodivers Data J
August 2025
Institute of Biology of the Karelian Research Centre of the Russian Academy of Sciences, Petrozavodsk, Russia Institute of Biology of the Karelian Research Centre of the Russian Academy of Sciences Petrozavodsk Russia.
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View Article and Find Full Text PDFMar Life Sci Technol
August 2025
Department of Marine Sciences, University of Puerto Rico at Mayagüez, P.O. Box 9000, Mayagüez, PR 00681 USA.
Unlabelled: The queen snapper ( Valenciennes in Cuvier & Valenciennes, 1828) is a deep-sea snapper whose commercial importance continues to increase in the US Caribbean. However, little is known about the biology and ecology of this species. In this study, the presence of a fine-scale population structure and genetic diversity of queen snapper from Puerto Rico was assessed through 16,188 SNPs derived from the Restriction site Associated DNA Sequencing (RAD-Seq) technique.
View Article and Find Full Text PDFFront Plant Sci
August 2025
Botany Area, Department of Plant Biology and Ecology, Faculty of Biology, University of Seville, Seville, Spain.
Understanding the relationship between macro- and microevolutionary processes and their delimitation remains a challenge. This review focuses on the role of chromosomal rearrangements in plant population differentiation and lineage diversification resulting in speciation, helping bridge the gap between macro- and microevolution through chromosomal evolution. We focus on angiosperms, a group that comprises the majority of extant plant species diversity and exhibits the largest chromosomal and genomic variations.
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