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The nanoparticle corona─a molecular layer adsorbed on nanoparticle surfaces─is critical for controlling molecular interactions and enabling applications in catalysis, nanoparticle separations, and sensing technologies. However, to date, characterizing the adsorbed surface area occupied by the corona phase has been difficult and not accessible with conventional particle sizing methods. Herein, we advance the technique of molecular probe adsorption (MPA) to measure this surface area by applying it to a large number of data sets. MPA employs a fluorescent probe that is quenched on adsorption to the nanoparticle surface to quantify the solvent-exposed surface area. We use MPA to evaluate 20 new carbon nanotube (CNT) corona phases and further analyze five previously studied constructs that have been used as nanosensors. We find that polymer stiffness, measured by its persistence length, correlates with corona phase CNT surface coverage, providing a new design criterion. We also establish a structure-property relationship linking MPA-derived surface area to probe adsorption parameters, noting that single-stranded DNA and high-molecular-weight polymers exhibit differing probe-corona interactions, with binding affinities varying by a factor of nearly 2.7. MPA-derived surface areas are shown to complement molecular-dynamics/thermodynamic calculations to predict binding affinities for 42 phytohormones entirely in silico, providing a means to screen corona phases virtually. In this way, MPA is shown to be a predictive design tool for nanoparticle and nanosensor applications.
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http://dx.doi.org/10.1021/acs.langmuir.5c01222 | DOI Listing |
Arch Microbiol
September 2025
Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), Vellore, 632014, India.
Salmonella enterica serovar Typhi, the etiological agent of Typhoid fever, remains a critical public health concern associated with high morbidity in many developing countries. The widespread emergence of multidrug-resistant (MDR) Salmonella Typhi strains against the fluoroquinolone group of antibiotics, particularly ciprofloxacin, poses a significant global therapeutic challenge with underlying resistance due to mutations in quinolone-resistance determining region (QRDR) of gyrA gene, encoding DNA gyrase subunit A (GyrA). In pursuit of alternative therapeutic candidates, the present study was designed to evaluate ciprofloxacin analogues against prevalent GyrA mutations (S83F, D87G, and D87N) to overcome fluoroquinolone resistance through machine learning (ML)-based approach.
View Article and Find Full Text PDFInt J Numer Method Biomed Eng
September 2025
Department of Chemical System Engineering, School of Engineering, The University of Tokyo, Tokyo, Japan.
The effect of shape and size of embolic agents on embolization phenomena has been discussed clinically for transcatheter arterial chemoembolization (TACE). We numerically discussed the unique embolization behavior of new deformable toroidal microparticles in blood vessels by computational fluid dynamics simulations. We employed an Eulerian-Eulerian (full Eulerian) fluid-structure interaction (FSI) method to analyze the flow and deformation behaviors of a deformable torus in a cylindrical pipe.
View Article and Find Full Text PDFJ Chem Phys
September 2025
Instituto de Ciencia de Materiales de Madrid (ICMM), Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.
The mechanical properties of graphene are investigated using classical molecular dynamics simulations as a function of temperature T and external stress τ. The elastic response is characterized by calculating elastic constants via three complementary methods: (i) numerical derivatives of stress-strain curves, (ii) analysis of cell fluctuation correlations, and (iii) phonon dispersion analysis. Simulations were performed with two interatomic models: an empirical potential and a tight-binding electronic Hamiltonian.
View Article and Find Full Text PDFNew Phytol
September 2025
Department of Biology, University of Nevada, Reno, Reno, NV, 89557, USA.
Many plants are defended from herbivory by costly insect mutualists. Understanding positive associations between plants and mutualists requires a whole-plant perspective including roots. We hypothesized that root surface area increases with mutualist activity (to a saturation threshold) and recent rainfall but that this relationship shifts when herbivores are excluded.
View Article and Find Full Text PDFFront Hum Neurosci
August 2025
Signal Processing Laboratory (LTS5), École Polytechnique Féderale de Lausanne (EPFL), Lausanne, Switzerland.
Introduction: Absence of language development is a condition encountered across a large range of neurodevelopmental disorders, including a significant proportion of children with autism spectrum disorder. The neurobiological underpinnings of non-verbal ASD (nvASD) remain poorly understood.
Methods: This study employed multimodal MRI to investigate white matter (WM) microstructural abnormalities in nvASD, focusing on language-related pathways.