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Studying low-abundance cells at the single-cell level is critical for revealing unique biological functions. Efficient single-cell isolation technology can significantly enhance low-abundance single-cell detection sensitivity. However, the lack of individual control over each target cell hinders further bio-analysis. Here, a "cell-on-demand" large-scale digital microfluidics platform is reported for real-time low-abundance single-cell manipulations. Compared to the conventional strategy that sequentially identifies the target cells among the heterogeneous population, the "cell-on-demand" method can conduct targeted-search-guided target cell isolation, enabled by on-demand droplet splitting. The results demonstrate that "cell-on-demand" is nearly eightfold more effective compared to the conventional strategy in dealing with low-abundance (1%) single-cells. To validate the system's feasibility, heterogenous tumor spheroids samples are used for isolating homogeneous single-target tumor spheroids, in integration with subsequent drug sensitivity testing and analysis. Drug sensitivity results show significant differences in half-maximal inhibitory concentration (IC50) for three chemotherapy drugs: Fluorouracil, Irinotecan, and Oxaliplatin, while in high consistency with well-plate-based assays. With the capability of processing both high and low-abundance samples, the proposed platform shows potential in handling various samples and in broader applications.
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http://dx.doi.org/10.1002/smll.202504239 | DOI Listing |
bioRxiv
December 2024
Center of Lung Aging and Regeneration, Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Cellular senescence is a major hallmark of aging. Senescence is defined as an irreversible growth arrest observed when cells are exposed to a variety of stressors including DNA damage, oxidative stress, or nutrient deprivation. While senescence is a well-established driver of aging and age-related diseases, it is a highly heterogeneous process with significant variations across organisms, tissues, and cell types.
View Article and Find Full Text PDFMotivation: Extracellular vesicle (EV) RNA sequencing has emerged as a powerful approach for studying RNA biomarkers and intercellular communication. Nevertheless, the extremely low abundance, fragmented nature and ubiquitous tissue origin of EV RNAs, alongside potential contamination from co-isolated materials, such as free DNA and bacterial RNA, pose substantial analytical challenges. These complexities highlight a pressing need for a standardized, computational workflow that ensures robust quality control and EV RNA characterization.
View Article and Find Full Text PDFFront Med
August 2025
Key Laboratory of Neuroregeneration of Jiangsu and Ministry of Education, Co-innovation Center of Neuroregeneration, NMPA Key Laboratory for Research and Evaluation of Tissue Engineering Technology Products, Nantong University, Nantong, 226000, China.
Effective axon regeneration is essential for the successful restoration of nerve functions in patients suffering from axon injury-associated neurological diseases. Certain self-regeneration occurs in injured peripheral axonal branches of dorsal root ganglion (DRG) neurons but does not occur in their central axonal branches. By performing rat sciatic nerve or dorsal root axotomy, we determined the expression of the dysbindin domain containing 2 (DBNDD2) in the DRGs after the regenerative peripheral axon injury or the non-regenerative central axon injury, respectively, and found that DBNDD2 is down-regulated in the DRGs after peripheral axon injury but up-regulated after central axon injury.
View Article and Find Full Text PDFUnlabelled: Recent advances in spatial proteomics have enabled high-dimensional protein analysis within tissue samples, yet few methods accurately detect low-abundance functional proteins. Spatial MIST (Multiplex Tagging) is one such technique, capable of profiling over 100 protein markers spatially at single-cell resolution on tissue sections and cultured cells. However, despite the availability of various open-source tools for image registration and visualization, no dedicated software exists to align the images and analyze spatial MIST data effectively.
View Article and Find Full Text PDFGenome Biol
July 2025
School of Biomedical Sciences, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong, China.
Single-cell profiling protein-chromatin interactions is often constrained by complex workflows, high cost, or dependence on specialized equipment. We present indexed tagmentation-based single-cell CUT&Tag-sequencing (IT-scC&T-seq), a modular, plate-based strategy using three-round combinatorial barcoding. IT-scC&T-seq robustly profiles histone modifications and transcription factors with high specificity and throughput, supporting simultaneous analysis of multiple samples and epitopes.
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