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With a Gemini surfactant architecture and cationic 4-aminopyridinium headgroups, octenidine dihydrochloride (OCT) is one of the most potent antimicrobial actives. However, how its unique molecular architecture orchestrates interactions with lipopolysaccharides (LPS), a major constituent of the Gram-negative bacteria outer membrane, is not well understood. To probe OCT-LPS molecular interactions, we have studied the morphology and structure of nanoaggregates co-assembled between OCT and LPS. Furthermore, OCT was compared with Alkyl 8-10-8, an architecturally analogous Gemini surfactant with quaternary ammonium headgroups. Small-angle neutron scattering (SANS) revealed that, upon addition of 1.2 CMC OCT in the presence of 2.5 mM Ca, worm-like LPS-smooth micelles (of a radius ∼11.8 nm and a length ∼300 nm) transformed into longer rods with an ellipsoidal cross-section (9.4 nm × 29.3 nm) up to 3 µm in length. In contrast, co-assembly with 1.2 CMC Alkyl 8-10-8 led to a nano-aggregate mixture of lamellae and globules. Complementary cryo-TEM, dynamic light scattering, and zeta potential measurements further informed on the LPS-Gemini co-assembled nanostructures. To reconcile these observations, we suggest that the 4-aminopyridinium headgroups of OCT bind to anionic Lipid A phosphates in LPS through electrostatic, H-bonding, and π-system interactions, displacing bridging Ca ions. In contrast, the dimethylammonium headgroups of Alkyl 8-10-8 would undergo dynamic exchange with the Ca bridging between Lipid A phosphates, instead of binding to Ca, evident from disintegration of the worm-like aggregates. These findings provide mechanistic insights into the molecular interactions mediated by the OCT architecture, underpinning binding and subsequent disruption of the LPS-rich outer membrane leaflet in Gram-negative bacteria, with implications to future rational design of antimicrobial agents.
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http://dx.doi.org/10.1016/j.jcis.2025.137740 | DOI Listing |
Photochem Photobiol Sci
September 2025
Department of Genetics and Plant Breeding, C. P. College of Agriculture, S. D. Agricultural University, Sardarkrushinagar, 385506, India.
The electromobility shift assay (EMSA) is a popular and productive molecular biology tool for studying protein-nucleic acid interactions. EMSA is a technique applied to the revelation of the binding dynamics of proteins, like transcription factors, to DNA or RNA. There are ample essential phases in the technique.
View Article and Find Full Text PDFVirchows Arch
September 2025
Department of Oral Surgery and Pathology, School of Dentistry, Universidade Federal de Minas Gerais, Minas Gerais, Av. Antônio Carlos, Pampulha, Belo Horizonte, 31270-901, Brazil.
Plasmablastic lymphoma (PBL) is a rare and aggressive non-Hodgkin lymphoma with a poor prognosis and short survival rates. It is classified as a large B-cell lymphoma subtype, but carries a plasmacytic immunophenotype. Therefore, PBL has pathogenetic overlaps with diffuse large B-cell lymphoma not otherwise specified (DLBCL NOS) and plasma cell neoplasms (PCNs).
View Article and Find Full Text PDFNat Biotechnol
September 2025
Key Laboratory of RNA Innovation, Science and Engineering, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.
Targeted protein degraders hold potential as therapeutic agents to target conventionally 'undruggable' proteins. Here, we develop a high-throughput screen, DEath FUSion Escaper (DEFUSE), to identify small-molecule protein degraders. By conjugating the protein of interest to a fast-acting triggerable death protein, this approach translates target protein degradation into a cell survival phenotype to illustrate the presence of degraders.
View Article and Find Full Text PDFNature
September 2025
Department of Laboratory Medicine and Pathology, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Alberta, Canada.
Cancer-associated muscle wasting is associated with poor clinical outcomes, but its underlying biology is largely uncharted in humans. Unbiased analysis of the RNAome (coding and non-coding RNAs) with unsupervised clustering using integrative non-negative matrix factorization provides a means of identifying distinct molecular subtypes and was applied here to muscle of patients with colorectal or pancreatic cancer. Rectus abdominis biopsies from 84 patients were profiled using high-throughput next-generation sequencing.
View Article and Find Full Text PDFNature
September 2025
Department of Translational Genomics, Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne, Germany.
Small cell lung cancer (SCLC) is a highly aggressive type of lung cancer, characterized by rapid proliferation, early metastatic spread, frequent early relapse and a high mortality rate. Recent evidence has suggested that innervation has an important role in the development and progression of several types of cancer. Cancer-to-neuron synapses have been reported in gliomas, but whether peripheral tumours can form such structures is unknown.
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