Discovery, functional characterization, and structural studies of the NRPS-independent siderophore synthetases.

Crit Rev Biochem Mol Biol

Department of Structural Biology, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.

Published: December 2024


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

To adapt to low-iron environments, many bacteria produce siderophores, low molecular weight iron chelators that are secreted into the environment where they bind ferric iron. The production of siderophore uptake systems then allows retrieval of the iron-complexed siderophore into the cell, where the metal ion can be used for structural and catalytic roles in many proteins. While many siderophores are produced by the activity of a family of large modular nonribosomal peptide synthetase (NRPS) enzymes, a second class of siderophores are produced by an alternate pathway. These so-called NRPS-independent siderophores (NIS) are biosynthesized through a shared catalytic step that is performed by an NIS synthetase. These enzymes catalyze the formation of an amide linkage between a carboxylate and an amine or, more rarely, form an ester with a hydroxyl substrate. Here we describe the discovery and biochemical studies of diverse NIS synthetases from different siderophore pathways to provide insight into their substrate specificity and catalytic mechanism. The structures of a small number of family members are additionally described that correlates the functional work with the enzyme structure. While the field has come a long way since it was described as a "long-overlooked" family in 2009, there remains much to discover in this large and important enzyme family.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC12033978PMC
http://dx.doi.org/10.1080/10409238.2025.2476476DOI Listing

Publication Analysis

Top Keywords

siderophores produced
8
discovery functional
4
functional characterization
4
characterization structural
4
structural studies
4
studies nrps-independent
4
siderophore
4
nrps-independent siderophore
4
siderophore synthetases
4
synthetases adapt
4

Similar Publications

Endophytic Fusarium isolates from Ceratozamia mirandae enhance tomato growth, suppress pathogenic fungi, and induce protection against Botrytis cinerea.

Rev Argent Microbiol

September 2025

IPICYT, División de Biología Molecular, Laboratorio de Genómica Funcional y Comparativa, Camino a la Presa San José 2055, Col. Lomas 4 Sección, 78216 San Luis Potosí, SLP, Mexico.

Fungal diseases in agricultural crops cause economic losses, with chemical control being the conventional method to manage them. However, this approach negatively impacts both the environment and human health. This study focused on endophytic fungi isolated from the roots of Ceratozamia mirandae in the Mexican locality of Juan Sabines (Villa Corzo, Chiapas).

View Article and Find Full Text PDF

Introduction: Wheat is one of the three major cereal crops in the world and is susceptible to the effects of drought stress. Rhizosphere microorganisms can affect plant growth by altering nutrient absorption and resistance to stress. Studying the plant-microbe interaction under drought stress to reveal the impact of soil microorganisms on plant growth in dry land has important scientific significance.

View Article and Find Full Text PDF

Methane is a potent greenhouse gas and a target for near-term climate change mitigation. In many natural ecosystems, methane is sequestered by microbial communities, yet little is known about how constituents of methane-oxidizing communities interact with each other and their environment. This lack of mechanistic understanding is a common issue for many important microbial communities, but it is difficult to draw links between available sequencing information and the metabolites that govern community interactions.

View Article and Find Full Text PDF

Photoinduced Nitric Oxide Exchange in the Diazeniumdiolate Siderophore, Pandorachelin.

ACS Chem Biol

September 2025

Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106-9510, United States.

-diazeniumdiolate siderophores are a small class of photoactive bacterial Fe(III) chelators. Driven by genome mining, we discovered a new -type diazeniumdiolate siderophore, pandorachelin, produced by the rhizospheric bacterium, DSM 11628. The biosynthetic gene cluster encoding the production of pandorachelin is conserved across several species.

View Article and Find Full Text PDF

Structural basis of iron piracy by human gut .

bioRxiv

August 2025

Biosciences Institute, Newcastle University, Framlington Place, Newcastle upon Tyne, NE2 4HH, United Kingdom.

Iron is an essential element that can be growth-limiting in microbial communities, particularly those present within host organisms. To acquire iron, many bacteria secrete siderophores, secondary metabolites that chelate ferric iron. These iron chelates can be transported back into the cell via TonB-dependent transporters in the outer membrane, followed by intracellular liberation of the iron.

View Article and Find Full Text PDF