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The massive production and widespread use of plastics have resulted in a growing marine plastic pollution problem. Cold seep ecosystems are maintained by microorganisms related to nitrogen and carbon cycling that occur in deep-sea areas, where cold hydrocarbon-rich water seeps from the ocean floor. Little is known about plastic pollution in this ecosystem. To fill this knowledge gap, we collected sediment and seawater samples from the Haima cold seep and conducted laboratory cultivation experiments, simulating in situ environmental conditions. Environmental factors and microbial genetics were analyzed at different stages over a 2-month cultivation period. Our main conclusions are as follows: (1) When microplastics (MPs) were added to sediment and seawater environments, the microbial communities most closely resembled those of the original habitat. The changes in the plastisphere communities were mainly associated with the culture time. (2) The co-occurrence network of the plastisphere was more fragile than that of environments. (3) Multiple environmental factors determined the community composition, whereas a small number of environmental variables drove the community function. MPs affected nitrogen cycling and methane metabolism and might aggregate pathogenic species. This work provides a better perspective of the effect of MPs on the community structure and function in cold seeps.
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http://dx.doi.org/10.1021/acs.est.4c08102 | DOI Listing |
ISME J
September 2025
Division of Biology and Biological Engineering, California Institute of Technology Pasadena, California, United States.
At methane seeps worldwide, syntrophic anaerobic methane-oxidizing archaea and sulfate-reducing bacteria promote carbonate precipitation and rock formation, acting as methane and carbon sinks. Although maintenance of anaerobic oxidation of methane (AOM) within seep carbonates has been documented, its reactivation upon methane exposure remains uncertain. Surface-associated microbes may metabolize sulfide from AOM, maintain carbonate anoxia, contribute to carbonate dissolution, and support higher trophic levels; however, these communities are poorly described.
View Article and Find Full Text PDFMar Drugs
July 2025
Zhejiang Key Laboratory of Green, Low-Carbon, and Efficient Development of Marine Fishery Resources, College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Zhejiang University of Technology, Hangzhou 310014, China.
Cold seep ecosystems harbor unique microbial communities with potential for producing secondary metabolites. However, the metabolic potential of cold seep microorganisms in the South China Sea remains under-recognized. This study employed both culture-dependent and culture-independent approaches, including 16S rRNA amplicon sequencing and metagenomics, to investigate microbial communities and their potential for secondary metabolite production in the South China Sea cold seep.
View Article and Find Full Text PDFResearch (Wash D C)
August 2025
Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China.
Cold seep ecosystems serve as critical hubs in marine carbon cycling through methane emissions and organic matter processing. While terrestrial lignin constitutes a major fraction of persistent organic carbon in cold seep sediments, its microbial transformation pathways in deep-sea cold seep environments remain unexplored. Here, we present the first comprehensive analysis of lignin distribution across sediment horizons at the Haima cold seep, coupled with a multi-omics investigation of microbial lignin metabolism.
View Article and Find Full Text PDFMicrobiol Spectr
August 2025
Geomicrobiology Group, Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.
Unlabelled: Hydrocarbon seepage in marine sediments exerts selective pressure on benthic microbiomes. Accordingly, microbial community composition in these sediments can reflect the presence of hydrocarbons, with specific groups being more prolific in association with seepage. Here, we tested machine learning models with large 16S rRNA gene amplicon data sets derived from marine sediments in deep-sea hydrocarbon prospective areas of the Eastern Gulf of Mexico and NW Atlantic Scotian Slope.
View Article and Find Full Text PDFMar Genomics
August 2025
College of Pharmaceutical Science & Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Zhejiang University of Technology, Hangzhou 310014, China. Electronic address:
Lysinibacillus sp. WB86 was isolated from a cold seep in the South China Sea, and its complete genome was sequenced using Oxford Nanopore Technologies (ONT). The genome consists of a single circular chromosome spanning 4,537,071 bp, with a G + C content of 37 %.
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