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Electronic circular dichroism (ECD) spectra contain key information about molecular chirality by discriminating the absolute configurations of chiral molecules, which is crucial in asymmetric organic synthesis and the drug industry. However, existing predictive approaches lack the consideration of ECD spectra owing to the data scarcity and the limited interpretability to achieve trustworthy prediction. Here we establish a large-scale dataset for chiral molecular ECD spectra and propose ECDFormer for accurate and interpretable ECD spectrum prediction. ECDFormer decomposes ECD spectra into peak entities, uses the QFormer architecture to learn peak properties and renders peaks into spectra. Compared with spectrum sequence prediction methods, our decoupled peak prediction approach substantially enhances both accuracy and efficiency, improving the peak symbol accuracy from 37.3% to 72.7% and decreasing the time cost from an average of 4.6 central processing unit hours to 1.5 s. Moreover, ECDFormer demonstrated its ability to capture molecular orbital information directly from spectral data using the explainable peak-decoupling approach. Furthermore, ECDFormer proved to be equally proficient at predicting various types of spectrum, including infrared and mass spectroscopies, highlighting its substantial generalization capabilities.
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http://dx.doi.org/10.1038/s43588-024-00757-7 | DOI Listing |
J Sep Sci
September 2025
Programa de Pós-Graduação em Ciências Farmacêuticas, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil.
Nifurtimox (NFX) is a chiral drug used for the treatment of Chagas Disease. Little attention has been paid to the enantioselective properties of chiral drugs used for neglected tropical diseases, highlighting the need for further studies in this area. In this work, the enantioselective properties of NFX were carefully investigated by HPLC using different chiral stationary phases (CSPs) and chromatographic modes.
View Article and Find Full Text PDFInt J Mol Sci
August 2025
Food, Nutrition and Natural Product Chemistry Laboratory, School of Science and Technology, Bangladesh Open University, Gazipur 1705, Bangladesh.
The widespread emergence of resistant pathogenic microorganisms are diminishing the effectiveness of existing antimicrobial drugs, posing an enormous threat to global public health. This phenomenon, known as antimicrobial resistance (AMR), is primarily driven by the misuse and overuse of antimicrobial drugs. Natural product researchers around the globe, in response to antibiotics resistance, are searching for new antimicrobial lead compounds from unexplored or underexplored ecological niches such as the marine environment.
View Article and Find Full Text PDFChem Biodivers
August 2025
Instituto de Química, Departamento de Productos Naturales, Universidad Nacional Autónoma de México, Mexico City, Mexico.
Two new oxygenated solanapyrone analogues, nigrosporapyrone E (1) and nigrosporapyrone F (2), were isolated from Nigrospora sp. strain IQ-064, a fungus associated with the bark of black mangrove (Avicennia germinans L.), along with seven known compounds.
View Article and Find Full Text PDFBioorg Chem
August 2025
School of Pharmaceutical Sciences, Anhui Medical University, Hefei 230032, China. Electronic address:
Fifteen new isocoumarin derivatives 1-3, (±)-4, (±)-5, 6-10, (+)-11, (+)-12, and 13, together with eleven known analogues (-)-11, (-)-12, and 14-22 were isolated from the mangrove endophytic fungus Alternaria sp. HN-17. Their structures were unambiguously established by 1D/2D NMR and HRESIMS spectra, and electronic circular dichroism (ECD) calculations.
View Article and Find Full Text PDFMolecules
July 2025
Marine Natural Products Team, Institut de Chimie de Nice, Université Côte d'Azur, CNRS UMR 7272, 06108 Nice, France.
A new bicyclic polyketide, amesilide (), along with the previously reported metabolites, chamisides A (), B (), and E (), chaetoconvosins B () and C (), and chaetochromins A () and B (), were isolated from the marine fungus MUT6601. The structures of the compounds were determined by extensive spectrometric (HRMS) and spectroscopic (1D and 2D NMR) analyses, as well as specific rotation. Absolute configurations of the stereogenic centers of amesilide () were determined by a comparison of its experimental circular dichroism (CD) spectrum with its time-dependent density functional theory (TD-DFT) electronic circular dichroism (ECD) spectra.
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