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The cerambycid beetles are key players for the sustenance of biodiversity in the forest ecosystem, but in most cases are well known due to their harmfulness to agricultural and forest plants. Here, we characterized the odorant binding protein (OBP) gene family in Rhaphuma horsfieldi, emphasizing the roles of RhorOBP1 in odorant reception and insecticide sequestering. A homology-based search led to the identification of 35 RhorOBP genes with a major distribution in the Minus-C OBPs clade (21/35 genes). Expression profiles showed that RhorOBP1-RhorOBP4 had the abundant expression in antennae. Binding assays revealed that the four RhorOBPs exhibited diverse odorant response profiles tuned differentially to various classes of plant odorants, comprising walnut-derived host volatiles and ordinary floral scents. Two broadly tuned RhorOBP1 and RhorOBP2 exhibited different chain length-dependent binding properties to 10C12C alcohols, aldehydes or acetates. Compared with other three proteins, RhorOBP1 reduced the binding to ligands with high affinities at pH 5.0 (1.27-6.72-fold differences relative to pH 7.4). Molecular docking and point-mutation experiments confirmed that Ser107, Tyr118, Tyr119 and Phe120 situated in the binding pocket of RhorOBP1 were critical determinants for the recognition of 14, 15, 10 and 10 compounds, respectively. On the other hand, RhorOBP1 could strongly bind six insecticides, particularly chlorpyrifos (dissociation constant, K = 3.69 ± 0.74 μM). This study has provided insights into different binding properties of four antenna-enriched RhorOBPs in R. horsfieldi and identifies a dual role of RhorOBP1 in the binding of odorants and insecticides.
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http://dx.doi.org/10.1016/j.pestbp.2024.106210 | DOI Listing |
Magn Reson Chem
September 2025
Department of Chemistry, Clemson University, Clemson, South Carolina, USA.
Saturation transfer difference (STD) NMR is a robust, versatile technique for detecting small molecules binding to large receptors. In addition to identifying binding molecules in the presence of nonbinding molecules, the STD-NMR technique can be used to determine epitope maps and binding constants. In recent years, this technique has been applied to small molecules interacting with nanoparticles.
View Article and Find Full Text PDFPhotochem Photobiol Sci
September 2025
Department of Genetics and Plant Breeding, C. P. College of Agriculture, S. D. Agricultural University, Sardarkrushinagar, 385506, India.
The electromobility shift assay (EMSA) is a popular and productive molecular biology tool for studying protein-nucleic acid interactions. EMSA is a technique applied to the revelation of the binding dynamics of proteins, like transcription factors, to DNA or RNA. There are ample essential phases in the technique.
View Article and Find Full Text PDFPharm Res
September 2025
Axcelead Tokyo West Partners, Inc. Translational Science, Discovery DMPK, Hino-Shi, Tokyo, 191-0065, Japan.
Purpose: Accurate prediction of human clearance (CL) is essential in early drug development. Single Species Scaling (SSS) using rat pharmacokinetic (PK) data, particularly with unbound plasma fraction (f), is widely used. However, its accuracy declines for compounds with extremely low f, and no systematic method has addressed this limitation.
View Article and Find Full Text PDFPharm Res
September 2025
Mechanical and Aerospace Engineering Department, University of Texas at Arlington, 500 W First St, Rm 211, Arlington, TX, 76019, USA.
Objective: A fundamental understanding of drug diffusion and binding processes is critical for the design and optimization of a wide variety of drug delivery devices. Most of the past literature assume binding to occur uniformly throughout the tissue, or, at best, in specific layers of a multilayer tissue. However, in many realistic scenarios, such as in cancer-targeting drugs, drug binding occurs in discrete irregularly shaped regions.
View Article and Find Full Text PDFCancer Immunol Immunother
September 2025
Department of Thoracic Surgery, Tangdu Hospital, Fourth Military Medical University, Xi'an, 710038, China.
Objective: CircRNAs are involved in cancer progression. However, their role in immune escape in non-small cell lung cancer (NSCLC) remains poorly understood.
Methods: This study employed RIP-seq for the targeted enrichment of circRNAs, followed by Western blotting and RT-qPCR to confirm their expression.