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During aerobic growth, relies on acetate overflow metabolism, a process where glucose is incompletely oxidized to acetate, for its bioenergetic needs. Acetate is not immediately captured as a carbon source and is excreted as waste by cells. The underlying factors governing acetate overflow in have not been identified. Here, we show that acetate overflow is favored due to a thermodynamic bottleneck in the TCA cycle, specifically involving the oxidation of succinate to fumarate by succinate dehydrogenase. This bottleneck reduces flux through the TCA cycle, making it more efficient for to generate ATP via acetate overflow metabolism. Additionally, the protein allocation cost of maintaining ATP flux through the restricted TCA cycle is greater than that of acetate overflow metabolism. Finally, we show that the TCA cycle bottleneck provides the flexibility to redirect carbon towards maintaining redox balance through lactate overflow when oxygen becomes limiting, albeit at the expense of ATP production through acetate overflow. Overall, our findings suggest that overflow metabolism offers distinct bioenergetic advantages over a thermodynamically constrained TCA cycle, potentially supporting its commensal-pathogen lifestyle.
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http://dx.doi.org/10.1101/2024.10.16.618751 | DOI Listing |
3 Biotech
September 2025
Research and Development, Biological E Limited, Plot No.1,Phase II, SP Biotech Park, Genome Valley, Shameerpet, Hyderabad, 500078 India.
is widely used in biopharmaceutical production due to its ability to grow aerobically and produce proteins intracellularly. However, the limitation of the fermentation process is acetate accumulation, a by-product of overflow metabolism during high-glucose aerobic growth, which negatively impacts cell growth and protein expression. Traditional strategies to mitigate this include genetic modifications or low-density fermentation, which have significant limitations.
View Article and Find Full Text PDFBioresour Technol
November 2025
Civil Engineering, School of Engineering, College of Science and Engineering, University of Galway, Galway H91 TK33, Ireland. Electronic address:
Ethanol plays a key role in advancing the sustainable technology of anaerobic digestion. A comprehensive understanding of ethanol metabolism is essential for optimizing the enhanced recovery of renewable energy from waste feedstocks via anaerobic digestion. This review aims to summarize key findings on ethanol metabolism, focusing on metabolic pathways, kinetics and ecological applications, as well as functional microorganisms and their enrichment strategies.
View Article and Find Full Text PDFBioresour Technol
July 2025
Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, PR China. Electronic address:
l-Alanine, a key chiral amino acid with broad industrial applications, was previously synthesized via thermal-regulated fermentation using an engineered Escherichia coli B0016-060BC. Upon thermal induction optimization, this strain achieved 167.7 g/L l-alanine from glucose.
View Article and Find Full Text PDFBiotechnol Bioeng
June 2025
School of Chemical, Materials and Biomedical Engineering, College of Engineering, The University of Georgia, Athens, Georgia, USA.
Escherichia coli accumulates acetate as a byproduct in fast growth aerobic conditions when using glucose as carbon source. This phenomenon, known as overflow metabolism, has negative impacts on cell growth and protein expression, also causes carbon loss during biosynthesis in most microbial production scenarios. In this study, we regarded the "waste" metabolite as a useful metabolism indicator, constructed an overflow biosensor to monitor the change of acetate concentration and converted the signal into various regulation outputs.
View Article and Find Full Text PDFJ Biomol NMR
September 2025
Nanofabrication and Nanocharacterization Center for Scientific and Technological Advanced Research (n²STAR), Koç University, İstanbul, Türkiye.
The use of Escherichia coli for recombinant protein production is a cornerstone in structural biology, particularly for nuclear magnetic resonance (NMR) spectroscopy studies. Understanding the metabolic behavior of E. coli under different carbon sources is critical for optimizing isotope labeling strategies, which are essential for protein structure determination by NMR.
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