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Radiomics aims to improve clinical decision making through the use of radiological imaging. However, the field is challenged by reproducibility issues due to variability in imaging and subsequent statistical analysis, which particularly affects the interpretability of the model. In fact, radiomics extracts many highly correlated features that, combined with the small sample sizes often found in radiomics studies, result in high-dimensional datasets. These datasets, which are characterized by containing more features than samples, have different statistical properties than other datasets, thereby complicating their training by machine learning and deep learning methods. This review critically examines the challenges of both reproducibility issues and interpretability, beginning with an overview of the radiomics pipeline, followed by a discussion of the imaging and statistical reproducibility issues. It further highlights how limited model interpretability hinders clinical translation. The discussion concludes that these challenges could be mitigated by following best practices and by creating large, representative, and publicly available datasets.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC12239541 | PMC |
http://dx.doi.org/10.4274/dir.2024.242719 | DOI Listing |
Mol Omics
September 2025
Laboratory of Structural Bioinformatics and Computational Biology, Federal University of Rio Grande do Sul, Av. Bento Gonçalves, 9500, Porto Alegre 91501-970, RS, Brazil.
The integration of multimodal single-cell omics data is a state-of-art strategy for deciphering cellular heterogeneity and gene regulatory mechanisms. Recent advances in single-cell technologies have enabled the comprehensive characterization of cellular states and their interactions. However, integrating these high-dimensional and heterogeneous datasets poses significant computational challenges, including batch effects, sparsity, and modality alignment.
View Article and Find Full Text PDFPatterns (N Y)
July 2025
University of Washington, Department of Astronomy, Seattle, WA, USA.
Machine learning and artificial intelligence promise to accelerate research and understanding across many scientific disciplines. Harnessing the power of these techniques requires aggregating scientific data. In tandem, the importance of open data for reproducibility and scientific transparency is gaining recognition, and data are increasingly available through digital repositories.
View Article and Find Full Text PDFScand J Surg
September 2025
Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
Scientific integrity relies on reproducibility. Reproducible scientific results are essential for advancing clinical practice and improving patient outcomes. However, despite the importance, reproducibility issues are widespread, often arising from inadequate methodologies and a lack of expertise in research design.
View Article and Find Full Text PDFEur J Public Health
September 2025
Copenhagen Health Complexity Center, Department of Public Health, University of Copenhagen, Copenhagen, Denmark.
The European Health Data Space (EHDS) regulation aims to facilitate cross-border sharing of health data across Europe. However, practical challenges related to data access, interoperability, quality, and interpretive competence remain, particularly when working with health systems across countries. This study aimed to evaluate and report the user journey of researchers accessing and utilizing health data across four European countries for secondary research purposes prior to implementation of EHDS.
View Article and Find Full Text PDFIEEE Trans Med Imaging
September 2025
Analyzing the spontaneous activity of the human brain using dynamic approaches can reveal functional organizations. The co-activation pattern (CAP) analysis of signals from different brain regions is used to characterize brain neural networks that may serve specialized functions. However, CAP is based on spatial information but ignores temporal reproducible transition patterns, and lacks robustness to low signal-to-noise rate (SNR) data.
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