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Background And Purpose: Image-based data mining (IBDM) requires spatial normalisation to reference anatomy, which is challenging in breast radiotherapy due to variations in the treatment position, breast shape and volume. We aim to optimise spatial normalisation for breast IBDM.
Materials And Methods: Data from 996 patients treated with radiotherapy for early-stage breast cancer, recruited in the REQUITE study, were included. Patients were treated supine (n = 811), with either bilateral or ipsilateral arm(s) raised (551/260, respectively) or in prone position (n = 185). Four deformable image registration (DIR) configurations for extrathoracic spatial normalisation were tested. We selected the best-performing DIR configuration and further investigated two pathways: ) registering prone/supine cohorts independently and ) registering all patients to a supine reference. The impact of arm positioning in the supine cohort was quantified. DIR accuracy was estimated using Normalised Cross Correlation (NCC), Dice Similarity Coefficient (DSC), mean Distance to Agreement (MDA), 95 % Hausdorff Distance (95 %HD), and inter-patient landmark registration uncertainty (ILRU).
Results: DIR using B-spline and normalised mutual information (NMI) performed the best across all evaluation metrics. Supine-supine registrations yielded highest accuracy (0.98 ± 0.01, 0.91 ± 0.04, 0.23 ± 0.19 cm, 1.17 ± 1.18 cm, 0.51 ± 0.26 cm for NCC, DSC, MDA, 95 %HD, and ILRU), followed by prone-prone and supine-prone registrations. Arm positioning had no significant impact on registration performance. For the best DIR strategy, uncertainty of 0.44 and 0.81 cm in the breast and shoulder regions was found.
Conclusions: B-spline algorithm using NMI and registered supine and prone cohorts independently provides the most optimal spatial normalisation strategy for breast IBDM.
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http://dx.doi.org/10.1016/j.phro.2024.100635 | DOI Listing |
Fungal Biol
October 2025
School of Life Sciences, Nanjing Normal University, Nanjing, 210023, Jiangsu Province, China. Electronic address:
Urban green areas are vital yet underexplored reservoirs of microbial diversity in cities. This study examines myxomycete communities in Zijin Mountain National Forest Park, a subtropical urban forest in Nanjing, China, across four seasons and multiple forest types. Combining field collections and moist chamber cultures, we documented 60 species from 906 occurrence records.
View Article and Find Full Text PDFMar Environ Res
September 2025
Department of Earth Sciences, National Taiwan Normal University, Taipei, Taiwan.
The northern South China Sea (SCS) shelf and southern Taiwan Strait (TS) are dynamic marginal seas influenced by both freshwater discharge from the Pearl River and seasonal coastal upwelling. These interacting hydrological forces shape ecological gradients that affect marine planktonic communities. Planktonic foraminiferal assemblages were analyzed from plankton tow and surface sediment samples collected during three cruises (2018, 2020, and 2022) along a ∼1000 km transect extending from the Pearl River estuary to the southern TS.
View Article and Find Full Text PDFJ Environ Manage
September 2025
College of Water Resources and Architectural Engineering at Northwest Agriculture and Forestry University/Key Laboratory of Agricultural Soil and Water Engineering in Arid and Semiarid Areas at Ministry of Education, Yangling, Shaanxi, 712100, PR China; Academy of Plateau Science and Sustainability,
Alpine ecosystems are critical for water regulation but highly sensitive to climate change. In the Three-River Source Region (TRSR) of the Qinghai-Tibet Plateau, changes in temperature, precipitation, and large-scale ecological restoration have significantly altered vegetation phenology-including the start (SOS), end (EOS), and length (LOS) of the growing season, as well as vegetation growth status (GS). These shifts affect hydrological processes such as evapotranspiration, soil moisture, snowmelt, and runoff.
View Article and Find Full Text PDFRisk Anal
September 2025
Edward J. Bloustein School, Rutgers University, New Brunswick, New Jersey, USA.
This AI-assisted review article offers a dual review: a book review of Living with Risk in the Late Roman World by Cam Grey, and a critical review of the current potential of large language models (LLMs), specifically ChatGPT's DeepResearch mode, to assist in thoughtful and scholarly book reviewing within risk science. Grey's book presents an innovative reconstruction of how communities in the late Roman Empire perceived and adapted to chronic environmental and societal risks, emphasizing spatial variability, cultural interpretation, and the normalization of uncertainty. Drawing on commentary from a human reviewer and a parallel AI-assisted analysis, we compare the distinct strengths and limitations of each approach.
View Article and Find Full Text PDFJ Environ Manage
September 2025
Hubei Key Laboratory of Regional Development and Environmental Response, Faculty of Resources and Environmental Science, Hubei University, No. 368 Youyi Avenue, Wuchang District, Wuhan, 430062, China. Electronic address:
Inland water ecosystems play key roles in the production, transportation, transformation, storage, and consumption of global greenhouse gases (GHG). Different water body types exhibit spatial and temporal differences after considering factors such as season and aquatic plant life forms. The results revealed that the annual global warming potential (GWP) (Tg CO-eq yr) from swamps, rivers, lakes, and reservoirs in China were 1382.
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