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Filamentous fungi produce polysaccharide-degrading enzymes, which is controlled by poorly understood transcriptional circuits. Here we show that a circuit comprising RsrC-RsrA-RsrB (Rsr: production of raw-starch-degrading enzyme regulator) that positively regulates production of raw starch-degrading enzymes in Penicillium oxalicum. Transcription factor (TF) RsrA is essential for biosynthesis of raw starch-degrading enzymes. RsrB and RsrC containing Zn2Cys6- and C2H2-zinc finger domains, act downstream and upstream of RsrA, respectively. RsrA activates rsrB transcription, and three nucleotides (G, G and G) of rsrB promoter region are required for RsrA, in terms of TF, for binding. RsrB binds to DNA sequence 5'-TCGATCAGGCACGCC-3' in the promoter region of the gene encoding key raw-starch-degrading enzyme PoxGA15A. RsrC specifically binds rsrA promoter, but not amylase genes, to positively regulate the expression of rsrA and the production of raw starch-degrading enzymes. These findings expand complex regulatory network of fungal raw starch-degrading enzyme biosynthesis.
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http://dx.doi.org/10.1038/s42003-024-06536-4 | DOI Listing |
Bioresour Bioprocess
April 2025
Department of Biotechnology, Faculty of Science and Technology, Thammasat University, Rangsit Campus, Khlong Nueang, Khlong Luang, 12120, Pathum Thani, Thailand.
Exploring novel amylolytic enzymes and understanding their biochemical properties are essential for advancing starch-based industries. This study focused on identifying the effective extracellular enzymes produced by Priestia koreensis HL12, a novel starch-converting bacterium, through a combined proteomics and genomics approach. Genome annotation revealed 82 genes belonging to various CAZyme families.
View Article and Find Full Text PDFFront Microbiol
March 2025
Agriculture and Food Systems, Tasmanian Institute of Agriculture University of Tasmania, Hobart, TAS, Australia.
Characterizing starch-degrading and associated enzymes remains relevant as various industries seek to harness their activity to produce valuable by-products, develop novel food applications, and to aid the sustainable bioconversion of starch-rich resources. To support this, we developed a targeted methodological and analysis framework utilizing complimentary phenomic and genomic assays informative of the starch degrading potential of . Adapted starch agar plate assays incorporating diversified starch sources and states facilitated the rating of extracellular amylolytic activity by starch-processing-line isolates [ ( = 3), ( = 2), and ( = 2)] as weak to moderate based on the complete or partial hydrolysis of retrograded soluble (SS), or potato and wheat (WS), starches, respectively, and the partial hydrolysis of raw SS.
View Article and Find Full Text PDFHeliyon
July 2024
Biochemistry and Biomolecular Engineering Research Division, Faculty of Mathematics and Natural Sciences, Institut Teknologi Bandung, Jl. Ganesa 10 Bandung, 40132, Indonesia.
BaqA is a raw starch degrading α-amylase produced by the marine bacterium MKSC 6.2, associated with soft corals. This α-amylase belongs to a new subfamily Glycoside Hydrolases (GH) 13_45 which has several unique characteristics, namely, a pair of tryptophan residues Trp201 and Trp202, a distinct LPDIx signature in the Conserved Sequence Region-V (CSR-V), and an elongated C-terminus containing five aromatic residues.
View Article and Find Full Text PDFAppl Environ Microbiol
August 2024
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, Guangxi, People's Republic of China.
Filamentous fungi can produce raw-starch-degrading enzyme, however, regulation of production of raw-starch-degrading enzyme remains poorly understood thus far. Here, two novel transcription factors raw-starch-degrading enzyme regulator D (RsrD) and raw-starch-degrading enzyme regulator E (RsrE) were identified to participate in the production of raw-starch-degrading enzyme in . Individual knockout of and in the parental strain Δ resulted in 31.
View Article and Find Full Text PDFCommun Biol
July 2024
State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi University, 100 Daxue Road, Nanning, Guangxi, 530004, P. R. China.
Filamentous fungi produce polysaccharide-degrading enzymes, which is controlled by poorly understood transcriptional circuits. Here we show that a circuit comprising RsrC-RsrA-RsrB (Rsr: production of raw-starch-degrading enzyme regulator) that positively regulates production of raw starch-degrading enzymes in Penicillium oxalicum. Transcription factor (TF) RsrA is essential for biosynthesis of raw starch-degrading enzymes.
View Article and Find Full Text PDF